Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2322g00006 ATGAGCATGTTAGGCCTTAGAGACTTAGTGCTCATAGCTCAAACACCTTCCCTGCACCAAGGCCAACCCATCTCAGAAAACCAAACTCCCAACCTTCCTCTTCCTTCTTCAGCCGCTCTCAGTGTTGGCTTTGGCATTTTCCCTCTCCTCACTGCCACACCCTGTGTGCCACACCCTCACCAAACCAATGAGATTCAAGACTGTGGTGCTGCTGCTGGTGGCAACACCACCACCACCAACTATTGGAACCTCAAGATGTGCCCAGAAGTGAATCCTCCGAAGAAGGGTGTGATCAACATGGATGATGACGAGGAGGAGGATGACGAGAGACATCATCACCATAAGGGTATGATGGAGAGCGAAGAAAATGGAATTTATGGACCTGACTTCCGAGTGTGTCAAGATTGTGGCAACAGGGCCAAAAAAGATTGCATCTTTAGAAGATGCAGGACTTGTTGCAAGGGACGCGGATACGATTGCAGCACTCATGTGAAGAGCACGTGGGTCCCTTCAATTCGCCGCCGGGAGCGGGAAATGGTGGTGGCTCCCGCCGGAGGCGTTGGTGGTGGCAGTAAGAGGCCAAGAGCTATAGTGGGGTCCTCACAAAATGCCACTGCCACTTCTCACAGCTCCAACTCCAATGCTACAACACCTAAAAGCTTAGCCACAATCTCTTCTCACCAAGATGCTAGCTTCAAACAGTCTTTACCTGGTCATGTTCGTGCACCTGCAGTGTTCAAGTGTCACAGAGTCTCTGCCATTGGGAATGGTGAAGATGAGTTTGCCTACTTGGCAACGGTGCACATCAGTGGCCATGTCTTCAAAGGGTTTCTCTATGACCATGGAGTTGATGGGAAAATTGCAAATGCAGTGCCTTGTGTTTCGGAACTGCAGCTGGGAAACAATTGCAGTGGCAAGAACAGAGAATGTTCTTCTGCAATTGGACTTCCAAATAACAATGCATACCCTGCTTCTGCCACCTGA 984 0.499 MSMLGLRDLVLIAQTPSLHQGQPISENQTPNLPLPSSAALSVGFGIFPLLTATPCVPHPHQTNEIQDCGAAAGGNTTTTNYWNLKMCPEVNPPKKGVINMDDDEEEDDERHHHHKGMMESEENGIYGPDFRVCQDCGNRAKKDCIFRRCRTCCKGRGYDCSTHVKSTWVPSIRRREREMVVAPAGGVGGGSKRPRAIVGSSQNATATSHSSNSNATTPKSLATISSHQDASFKQSLPGHVRAPAVFKCHRVSAIGNGEDEFAYLATVHISGHVFKGFLYDHGVDGKIANAVPCVSELQLGNNCSGKNRECSSAIGLPNNNAYPASAT 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2322g00006 327 MobiDBLite consensus disorder prediction 102 120 - -
Vium2322g00006 327 MobiDBLite consensus disorder prediction 183 219 - -
Vium2322g00006 327 Pfam Domain of unknown function (DUF702) 132 284 - -
Vium2322g00006 327 NCBIfam LRP1 C-terminal domain 236 283 IPR006511 -
Vium2322g00006 327 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 74 313 IPR007818 GO:0003700|GO:0006355
Vium2322g00006 327 NCBIfam putative zinc finger domain, LRP1 type 132 174 IPR006510 -
Vium2322g00006 327 MobiDBLite consensus disorder prediction 102 121 - -
Vium2322g00006 327 MobiDBLite consensus disorder prediction 196 219 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2322g00006 Vium-Chr2322 21457 24453 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2322g00006 133 322 C2H2 Transcription Factor Family AT5G12330 53.202 9.36e-54 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Vium2322g00006 DUF702 2e-54 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2322g00006 - - vun:114175485 590.112