Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2321g00005 ATGTTTGGTTCCGTGTTTTGCTTTCATTTTCTAGTCTCTTGTTTCATGCTTCCTGTCTTGCTTGCAGCTCAATGGGAACAATACCCAGAAGATTGTCCTCCTTCTCCTCAACCATGTGGCTATCTGGGGCATATCTTCCCCCCCTTCACAACAAGCAAAGATCCAAAATGTGGGTTGCGAATAAGTGGCTGTGATGACAACAGTGAAGTCAAACAAATCTCACTGACAGACCAAAAATGGTATAAAATTGATTCCATAATATATCCAACTTTGGATCCCAATGACCTTGCCATTTTCATCCATTACCCAGATTTTGACACCGTTGTTCCAGAGCAGCCTAGGCAGCCTTTTGAGATGGATAAAGAGTATTTCAAGATCTATAACAATGTTACCTTCTTTGGATGCCTTCGCAACACCGAAAACAAAATTTCAACCCCTCCAAACATGCTTTTATACAGACACTGTCAAAACATGTCTTTAAACTACGACATGTACTTCAGTTCTTCCCATGAAGTCGACTATCCCATGCCCAACATTCCGTTCGCATGCTTACTTTTTCAGGTTTCTCAATCTGGATCCTTTTGCAATTGCCCTTCATTTACACTTTTATTTTCTATTCTCCAAATTAAATTAAACATGCCCAAAAATTGCAAAGCCTGTCCTCATGGCCTGTGTAAGTTGAAGTTTGAAGGTCAACGCCTCAATTGTGACCCACCCAGTCATTATGGACAACCACCTCGTCTTTCCCCGTCCCTGGTTTCTCCACCTCCAACGGCCAAGGCTAAGAAACTGGCTTTATGTGTTGGAATACCAGTCCTGGTTGGGGTTTTTGCCTTGGTTGGTGTTATTCTTTTGTTGTTGAAAGGAAGAAAGAAACGTTCAGGCCTCCAAAACAAATCAAGAAACGTTTATTCTTCTTCCTTCATAAATACAACGTCCATGGAAAGTGGAGGTGTCTACTTTGGGATCTCTGTCTTCTCCTTCGACGAGCTCAGAGAGGCAACCAACAATTTTGATGAAGCTAGGAAGCTTGGAGAAGGAGGCTTTGGAACTGTTTACTTGGGAAAACTTAGAGATGGTCGTGAAGTTGCAGTGAAGCGCCTGTTCGAGCGCAGCTATAGGCCAGTGGAGTCATTCATCAATGAAATCCAGATTCTCACACGTCTGCGACACAGAAACCTTGTGTCCCTCTATGGCTGCACTTCGCGTCACAGCCGGGACTTACTGCTAGTGTACGAGCACATCCCAAATGGCACTGTTAGCTCTCATCTCCATGGTGATGAAGGAAATTCATGCTTTCTGCCATGGCATCTGAGAATGAAAATTGCCATACAAACTGCTAGTGCATTGGCTTATCTCCACGCTTCTGACACCATTCACAGGGACGTGAAAACCAGCAATATTCTCTTGGACAATGCGTTTGATGCTAAGGTTACGGATTTTGGTCTTTCAAGGCTGTTCCCTGATGATGTCACTCACGTTTCCACTGCTCCAAGAGGTACCCCTGGTTATGTTGATCCAGATTATCGGCTATGTTACCAGCTGACAACAAAGAGTGATGTATATAGCTTTGGGGTTGTGCTTGTTGAGTTAATATCATCTCTCAAAGCAGTTGATATGAACAGGAACAGGGAAGAAATTAAGTTGGCAAATCTTGCCATTAGGAAGATTCAAAAGGGTGCCTTTTCTGAGTTGGTTGATCCTTCCCTTGGTTTCCAATCAGATGAGAAACTAAAAATGATGATAGGTTCGGTGGCAGAGTTGGCTTTTCAGTGTCTGCAACAGGACAAGGAATTGAGACCCTCTATGGCTGAAGTATTGGAGGTGCTGGAGAGAATTCACAGTGGCAGGGATGAGCCACCGAATCAGGAGGGAATTGTCGTTAATGGTGCTATAAGAGCTTCTCAAAGCTATGCTCACCCACCTCTTCCAAACACTCTGATAAACCCACAAAACCGCCTTTTCAAAACAAACTGA 1977 0.436 MFGSVFCFHFLVSCFMLPVLLAAQWEQYPEDCPPSPQPCGYLGHIFPPFTTSKDPKCGLRISGCDDNSEVKQISLTDQKWYKIDSIIYPTLDPNDLAIFIHYPDFDTVVPEQPRQPFEMDKEYFKIYNNVTFFGCLRNTENKISTPPNMLLYRHCQNMSLNYDMYFSSSHEVDYPMPNIPFACLLFQVSQSGSFCNCPSFTLLFSILQIKLNMPKNCKACPHGLCKLKFEGQRLNCDPPSHYGQPPRLSPSLVSPPPTAKAKKLALCVGIPVLVGVFALVGVILLLLKGRKKRSGLQNKSRNVYSSSFINTTSMESGGVYFGISVFSFDELREATNNFDEARKLGEGGFGTVYLGKLRDGREVAVKRLFERSYRPVESFINEIQILTRLRHRNLVSLYGCTSRHSRDLLLVYEHIPNGTVSSHLHGDEGNSCFLPWHLRMKIAIQTASALAYLHASDTIHRDVKTSNILLDNAFDAKVTDFGLSRLFPDDVTHVSTAPRGTPGYVDPDYRLCYQLTTKSDVYSFGVVLVELISSLKAVDMNRNREEIKLANLAIRKIQKGAFSELVDPSLGFQSDEKLKMMIGSVAELAFQCLQQDKELRPSMAEVLEVLERIHSGRDEPPNQEGIVVNGAIRASQSYAHPPLPNTLINPQNRLFKTN 658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2321g00005 658 ProSitePatterns Protein kinases ATP-binding region signature. 344 366 IPR017441 GO:0005524
Vium2321g00005 658 FunFam receptor-like protein kinase FERONIA 298 414 - -
Vium2321g00005 658 CDD STKc_IRAK 344 613 - -
Vium2321g00005 658 Pfam Protein kinase domain 339 608 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2321g00005 658 ProSiteProfiles Protein kinase domain profile. 338 613 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2321g00005 658 SMART serkin_6 338 613 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2321g00005 658 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 11 624 IPR044652 GO:0004672
Vium2321g00005 658 SUPERFAMILY Protein kinase-like (PK-like) 320 623 IPR011009 -
Vium2321g00005 658 Gene3D Phosphorylase Kinase; domain 1 312 414 - -
Vium2321g00005 658 Gene3D Transferase(Phosphotransferase) domain 1 415 619 - -
Vium2321g00005 658 FunFam Wall-associated receptor kinase-like 20 415 623 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2321g00005 Vium-Chr2321 43426 46098 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2321g00005 39 621 Receptor kinase-like Gene Family AT1G25390 42.175 2.62e-137 414
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Vium2321g00005 Pkinase 1.3e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2321g00005 - - var:108334729 1231.08