Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2321g00004 ATGAGTAGCAATGGCGAAACTTGTAGTGCTAGTCTCGACATTAGGGCTTTAATTTGTCACGCTGCTGCTGGTGCCTCTGCAGGGACAATAGCGGCTACATTTGTGTGCCCGTTGGATGTGATCAAGACTAGGCTACAAGTCCATGGCCTTCCTCAAGGGCAGAAAGGTAATGTCATTGTCACAAGCTTGCAAAATATAGTAAGGAATGAGGGCTTCAGGGGAATGTACCGTGGCCTTTCACCGACGATACTGGCATTACTTCCAAACTGGGCAGTTTACTTCACAAGTTATGAGCTATTAAAAGACCTGCTTCGTTCACGTGATGGTTGCAAGGAACTCACAACTTTTGGACATATGACAGCTGCTGCTGCTGCTGGAGCAGCAACAGCAATTTCTGTAAATCCATTATGGGTTGTTAAGACAAGACTTCAAACACAAGGAATGAGACCCGATGTTGTTCCTTACAAGAGTGTTCTGTCTGCTCTGACAAGGATTACACGTGAGGAAGGCATAAGAGGCCTATATAGTGGCATTATTCCTTCATTGGCTGGCATAAGTCATGTTGCAATTCAATTTCCAGCATTTGAAAGGATCAAGTCATACATGGCAGAAAAAGATAACACAACTGTTGATAAGCTAAGTCCTGGAAGTGTTGCCATTGCATCATCAATTTCAAAAGTGTTTGCCTCTGTAATGACTTATCCACATGAGGTAATACGATCCCGGCTGCAAGAGCAAGGGCAGGCCAAAAGTAACGGGATACAATATACAGGGGTTATTGACTGTACCAAGAAGTTGTTTCAAAAGGAAGGCATTGCTGGGTTTTATCGTGGTTGTGCAACGAATCTTTTAAGAACAACTCCATCTGCTGTTATTACATTCACTAGTTATGAGATGATACAGAGGTTTTTGCAGCGAGTTGTACCCCAGGATAAAGGGTATCCACAAGGCTCTTCTAAACCCAATGAACTGAACAAAGCTCAGTCAAAAGCAGAAGCCAGTGACACTGATAGGGGACAACCACCGTCTCAGTCTAACATGAAAGCTTCGTCAATTCCTCTCGGAAACAAAGAGCAGCTAACACGACATTGA 1092 0.4377 MSSNGETCSASLDIRALICHAAAGASAGTIAATFVCPLDVIKTRLQVHGLPQGQKGNVIVTSLQNIVRNEGFRGMYRGLSPTILALLPNWAVYFTSYELLKDLLRSRDGCKELTTFGHMTAAAAAGAATAISVNPLWVVKTRLQTQGMRPDVVPYKSVLSALTRITREEGIRGLYSGIIPSLAGISHVAIQFPAFERIKSYMAEKDNTTVDKLSPGSVAIASSISKVFASVMTYPHEVIRSRLQEQGQAKSNGIQYTGVIDCTKKLFQKEGIAGFYRGCATNLLRTTPSAVITFTSYEMIQRFLQRVVPQDKGYPQGSSKPNELNKAQSKAEASDTDRGQPPSQSNMKASSIPLGNKEQLTRH 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2321g00004 363 FunFam Nicotinamide adenine dinucleotide transporter 2, mitochondrial 16 304 - -
Vium2321g00004 363 SUPERFAMILY Mitochondrial carrier 18 299 IPR023395 -
Vium2321g00004 363 MobiDBLite consensus disorder prediction 311 363 - -
Vium2321g00004 363 ProSiteProfiles Solute carrier (Solcar) repeat profile. 213 303 IPR018108 -
Vium2321g00004 363 Pfam Mitochondrial carrier protein 112 204 IPR018108 -
Vium2321g00004 363 Pfam Mitochondrial carrier protein 20 106 IPR018108 -
Vium2321g00004 363 Pfam Mitochondrial carrier protein 213 306 IPR018108 -
Vium2321g00004 363 Gene3D Mitochondrial carrier domain 15 304 IPR023395 -
Vium2321g00004 363 MobiDBLite consensus disorder prediction 315 363 - -
Vium2321g00004 363 PRINTS Mitochondrial carrier protein signature 128 146 IPR002067 GO:0055085
Vium2321g00004 363 PRINTS Mitochondrial carrier protein signature 20 33 IPR002067 GO:0055085
Vium2321g00004 363 PRINTS Mitochondrial carrier protein signature 78 98 IPR002067 GO:0055085
Vium2321g00004 363 PRINTS Mitochondrial carrier protein signature 33 47 IPR002067 GO:0055085
Vium2321g00004 363 PRINTS Mitochondrial carrier protein signature 222 244 IPR002067 GO:0055085
Vium2321g00004 363 ProSiteProfiles Solute carrier (Solcar) repeat profile. 15 103 IPR018108 -
Vium2321g00004 363 PANTHER MITOCHONDRIAL NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1-RELATED-RELATED 18 309 IPR044712 GO:0006862|GO:0055085
Vium2321g00004 363 ProSiteProfiles Solute carrier (Solcar) repeat profile. 113 201 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2321g00004 Vium-Chr2321 35308 40822 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2321g00004 1 357 Chloroplast and Mitochondria Gene Families AT1G25380 61.918 2.27e-147 419
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2321g00004 K15115 - gmx:100797064 610.142