Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2319g00003 ATGAATGTCACTCGTTCTGCTTTGGTGCTTCATCTCCAAAACCCACCAATTCGCTACCAGTTCTTCTCCCACTTCCTCAAACCAACCTTCCCTTCCGTATTCAAACCTCGTCCCTTCTCTCTAATCACTCCACGCCAAACACATGCTACACCCTTTGTTAATGCTGTTGCATCAGCTTCATCATCACAAGCTTCCAATGGCAGAGACACTTTCTTTGCAGAAGAAAACGTTTCCTGGACTTCACTTGGTCTCTCTGATACCATTTCTAGAGCACTCTCTGATATTGGCCTCAACAGACCCTCTCTCGTTCAGGCTTCTTCAGTACCGTCTGTGATGTCAGGGAAGGATGTTGTTATTGCCGCGGAGACTGGGAGTGGTAAAACATACAGTTACCTAGTTCCTCTTATTGATAAGCTAAGGGATGCCCAGGAACATTCTATACATGCTATGTCTGATCAGGAAGTGACCCCGACACAGAAAGTTCTGCTCATCCTTTGTCCGAATGTGCAACTTTGTGAGCAGGTAGTTAAGATGGCCAGCAGTCTACGTAGGGATGATGGTGAAGCCATAGTCAGTGTGGCTGCCATTTGTGGTAGGCAGGGATGGCCAATTCGGGAACCTGATGTCATTGTGACAACACCTGCTGCCCTTCTGAATTATGTTGACCTTGATAGAACCCGCCGTATGCAATTTATGCGTGGTGTTAAATATGTGGTGTTTGATGAAGCCGATATGCTTCTATGTGGGAGCTTCCAGAATAAAGTAATCCGTTTGATAAATTTGCTCCGCTTTGATGAAAAGGTCTTGTCTCGATCAAAAAAATCAGTAGCAGAGTTTTCAGCGAAAGATGAATCTTCCTTGTCATCAGAAGCTGCTTTTGAAGGTGAAGAGGAACTTCAAACTGAAGCCACCTTAGAAGAGGATGACACTGATAAAGAAGATGATATTGTTGATATTAATAATGAAGACACATCTGTTAAACAAAGAGACTGGAGGAGAGTGAGAAAAACTTATGAGCGTAGTAAACAGTATGTTTTTGTTGCTGCAACACTTCCAGTGAATGGAAAGAAGACAGCTGGAGGGATATTGAAACATATGTTTCCTGATGCTGAGTGGATTTGTGGAAACTATCTTCATTGCCACAATCCGAGATTGGAGCAAAAATGGATAGAAGTTACCGTTGATACTCAAGTGGATGAACTCATAAAGGCAGTGAATCACAGTTTCAGATCTGAAGATTTGGTTAATGCTGGTGGCATTCACAGAACAATGGTCTTTGCAAATACTGTTGAGGCTGTCGAAGCTGTGGCAAAGATATTACTCCGATCTGGAATTGAATGTTCACGCTATCATAAGAATTGCACATTGGAGGAGCGAGCACAGACCTTAGTTGATTTTCATGATAAAGGTGGTGTTCTTGTATGTACTGATGCTGCTGCTCGAGGTGTTGATATTCCAAATGTTTTACATGTTATTCAGGCAGATTTTGCTACTTCTGCTGTAGACTTTTTGCATAGGGTTGGTCGTACAGCTAGAGCTGGTCAAATTGGACTTGTTACTAGCATGTACACCGAATCCAATAGGGAACTTGTCGATGCAGTTCGTTGGGCAGAGAAACGTGGTCAACCTGTGGAAACTGCATTTAGCCGGAAAAGAAGCTTCCGCAACAAGCTCAAGAAGAGGGGTACTAACAAAGTCACAGATTCAACAACTGTTAAAGAGAGGGCACTGGCATGA 1737 0.4324 MNVTRSALVLHLQNPPIRYQFFSHFLKPTFPSVFKPRPFSLITPRQTHATPFVNAVASASSSQASNGRDTFFAEENVSWTSLGLSDTISRALSDIGLNRPSLVQASSVPSVMSGKDVVIAAETGSGKTYSYLVPLIDKLRDAQEHSIHAMSDQEVTPTQKVLLILCPNVQLCEQVVKMASSLRRDDGEAIVSVAAICGRQGWPIREPDVIVTTPAALLNYVDLDRTRRMQFMRGVKYVVFDEADMLLCGSFQNKVIRLINLLRFDEKVLSRSKKSVAEFSAKDESSLSSEAAFEGEEELQTEATLEEDDTDKEDDIVDINNEDTSVKQRDWRRVRKTYERSKQYVFVAATLPVNGKKTAGGILKHMFPDAEWICGNYLHCHNPRLEQKWIEVTVDTQVDELIKAVNHSFRSEDLVNAGGIHRTMVFANTVEAVEAVAKILLRSGIECSRYHKNCTLEERAQTLVDFHDKGGVLVCTDAAARGVDIPNVLHVIQADFATSAVDFLHRVGRTARAGQIGLVTSMYTESNRELVDAVRWAEKRGQPVETAFSRKRSFRNKLKKRGTNKVTDSTTVKERALA 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2319g00003 578 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 87 551 - -
Vium2319g00003 578 CDD DEADc 88 269 - -
Vium2319g00003 578 Gene3D - 53 367 IPR027417 -
Vium2319g00003 578 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 77 105 IPR014014 GO:0003724
Vium2319g00003 578 SMART ultradead3 96 388 IPR014001 -
Vium2319g00003 578 MobiDBLite consensus disorder prediction 295 310 - -
Vium2319g00003 578 Pfam DEAD/DEAH box helicase 103 281 IPR011545 GO:0003676|GO:0005524
Vium2319g00003 578 MobiDBLite consensus disorder prediction 287 310 - -
Vium2319g00003 578 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 108 369 IPR014001 -
Vium2319g00003 578 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 397 562 IPR001650 -
Vium2319g00003 578 SMART helicmild6 434 514 IPR001650 -
Vium2319g00003 578 Gene3D - 386 577 IPR027417 -
Vium2319g00003 578 CDD SF2_C_DEAD 385 523 - -
Vium2319g00003 578 Pfam Helicase conserved C-terminal domain 421 514 IPR001650 -
Vium2319g00003 578 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 109 526 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2319g00003 Vium-Chr2319 67565 73946 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2319g00003 328 535 Eukaryotic Initiation Factors Gene Family AT5G11200 25.105 1.51e-11 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2319g00003 - - gmx:100789323 931.784