Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2318g00002 ATGGCTTCCACACTGAGAATTTCAAGGCTCATCTCTCGCTCCTTTTCTTCTACTTCCTTCTTTTCACGAGGTAGAGGTGGGAATAGTTACCTTGGCTCAAGACTCTCTAAATACAGCACTGCTGCTGCCATTGAAGAACCCATTAAACCATCAGTTCAAGTGGAATATAACCAACTCTTAATTGATGGAAAATTCGTAGATGCTGCTTCCGGTAAAACTTTTCCAACTTTAGATCCAAGAACGGGGGAAGTGATTGCTCATGTTGCTGAGGGTCACTCTGAAGATGTTGATCGAGCTGTTGCAGCTGCACGCAAGGCATTTGATCATGGTCCATGGCCTAGGATGACAGCTTATGAAAGGCAAAGGATCTTGTTACGTGCCGCTGATCTGATTGAGAAGCATAATGATGAGATTGCAGCACTTGAGACTTGGGATAATGGAAAGCCTTATGAACAATCTGCTAAGATTGAGATTCCAATGCTTGTTCGTCTGATTCGATACTATGCTGGTTGGGCAGATAAGATTCATGGTCTAACAGTTCCAGCTGATGGACCTTATCATGTGCAAACTTTGCACGAACCCATTGGTGTTGCGGGTCAGATCATTCCTTGGAACTTCCCTCTTCTCATGTTTGCTTGGAAGGTTGGACCAGCATTGGCCTGTGGCAACACCATTGTTCTCAAAACAGCTGAGCAGACACCATTATCAGCTTTATATGTAGCAAAACTATTTCTTGAGGCTGGACTTCCTCCTGGAGTTTTAAATGTGATATCGGGATTTGGCCCGACTGCTGGTGCTGCTCTTGCAAGTCACATGGAGGTTGATAAGCTTGCTTTTACGGGTTCCACTGATACTGGGAAAGTTGTCCTAGAATTGGCGGCTAAAAGCAATCTTAAGCCTGTAACTTTGGAGCTTGGTGGGAAATCCCCGTTTATTGTGTGTGAAGACGCTGATGTAGATCAGGCTGTTGAGCTAGCACACTTTGCTTTATTCTTTAATCAGGGACAATGTTGCTGTGCTGGGTCACGAACATTTGTACACGAAAGAGTGTACGATGAGTTTGTTGAGAAAGCAAAGGCTCGTGCTTTGAAACGTGTTGTTGGTGATCCATTCAAGGGGGGTATAGAGCAGGGTCCTCAGATTGATTCAGATCAGTTTGAGAAAATCCTGAGGTATATCAGATATGGTGTTGAAAGTGGGGCTACCCTTGAAACCGGAGGAGACAGACTTGGCAACAAGGGCTTCTATATTCAACCAACTGTGTTCTCAAATGTTAAGGACGACATGCGGATTGCAAAGGATGAAATATTTGGTCCAGTCCAATCCATATTAAAATTCAAGGACCTTGGTGAGGTAGTTCAAAGAGCAAATAACACACGTTATGGGCTTGCAGCAGGAGTGTTCACAAAGAACATAGACACTGCCAACATTTTGACTCGGGCACTGAGAGTAGGAACAGTTTGGGTAAATTGCTTTGACACATTCGATGCTGCAATCCCCTTTGGGGGTTACAAGATGAGTGGTCAGGGCAGAGAAAAAGGAGAGTATAGTCTCAAGAACTACTTGCAAGTGAAGGCTGTTGTTAACCCCTTGAACAACCCAGCATGGCTTTGA 1614 0.4442 MASTLRISRLISRSFSSTSFFSRGRGGNSYLGSRLSKYSTAAAIEEPIKPSVQVEYNQLLIDGKFVDAASGKTFPTLDPRTGEVIAHVAEGHSEDVDRAVAAARKAFDHGPWPRMTAYERQRILLRAADLIEKHNDEIAALETWDNGKPYEQSAKIEIPMLVRLIRYYAGWADKIHGLTVPADGPYHVQTLHEPIGVAGQIIPWNFPLLMFAWKVGPALACGNTIVLKTAEQTPLSALYVAKLFLEAGLPPGVLNVISGFGPTAGAALASHMEVDKLAFTGSTDTGKVVLELAAKSNLKPVTLELGGKSPFIVCEDADVDQAVELAHFALFFNQGQCCCAGSRTFVHERVYDEFVEKAKARALKRVVGDPFKGGIEQGPQIDSDQFEKILRYIRYGVESGATLETGGDRLGNKGFYIQPTVFSNVKDDMRIAKDEIFGPVQSILKFKDLGEVVQRANNTRYGLAAGVFTKNIDTANILTRALRVGTVWVNCFDTFDAAIPFGGYKMSGQGREKGEYSLKNYLQVKAVVNPLNNPAWL 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2318g00002 537 Pfam Aldehyde dehydrogenase family 65 527 IPR015590 GO:0016491
Vium2318g00002 537 FunFam Aldehyde dehydrogenase, putative 499 525 - -
Vium2318g00002 537 FunFam Mitochondrial aldehyde dehydrogenase 2 309 498 - -
Vium2318g00002 537 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 41 527 - -
Vium2318g00002 537 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 71 527 IPR016162 GO:0016491
Vium2318g00002 537 CDD ALDH_F2BC 54 528 - -
Vium2318g00002 537 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 303 310 IPR029510 GO:0016491
Vium2318g00002 537 FunFam ALD5p Mitochondrial aldehyde dehydrogenase 61 319 - -
Vium2318g00002 537 SUPERFAMILY ALDH-like 53 531 IPR016161 GO:0016491
Vium2318g00002 537 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 331 342 IPR016160 GO:0016491
Vium2318g00002 537 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 309 498 IPR016163 GO:0016620
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2318g00002 Vium-Chr2318 10059 13515 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2318g00002 6 537 Aldehyde Dehydrogenase Gene Family AT3G48000 78.277 0.0 889
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2318g00002 K00128 - gmx:100811891 974.541