Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2318g00001 ATGGCTTCCACACTGAGAATTTCAAGGCTCATCTCTCGCTCCTTTTCTTCTACTTCCTTCTTTTCACGAGGTGGGAATAGTTACCTTGGCTCAAGACTCTCTAAATACAGCACTGCTGCTGCCATTGAAGAACCCATTAAACCATCAGTTCAAGTGGAATATAACCAACTCTTAATTGATGGAAAATTCGTAGATGCTGCTTCCGGTAAAACTTTTCCAACTTTAGATCCAAGAACGGGGGAAGTGATTGCTCATGTTGCTGAGGGTCACTCTGAAGATGTTGATCGAGCTGTTGCAGCTGCACGCAAGGCATTTGATCATGGTCCATGGCCTAGGATGACAGCTTATGAAAGGCAAAGGATCTTGTTACGTGCCGCTGATCTGATTGAGAAGCATAATGATGAGATTGCAGCACTTGAGACTTGGGATAATGGAAAGCCTTATGAACAATCTGCTAAGATTGAGATTCCAATGCTTGTTCGTCTGATTCGATACTATGCTGGTTGGGCAGATAAGATTCATGGTCTAACAGTTCCAGCTGATGGACCTTATCATGTGCAAACTTTGCACGAACCCATTGGTGTTGCGGGTCAGATCATTCCTTGGAACTTCCCTCTTCTCATGTTTGCTTGGAAGGTTGGACCAGCATTGGCCTGTGGCAACACCATTGTTCTCAAAACAGCTGAGCAGACACCATTATCAGCTTTATATGTAGCAAAACTATTTCTTGAGGCTGGACTTCCTCCTGGAGTTTTAAATGTGATATCGGGATTTGGCCCGACTGCTGGTGCTGCTCTTGCAAGTCACATGGAGGTTGATAAGCTTGCTTTTACGGGTTCCACTGATACTGGGAAAGTTGTCCTAGAATTGGCGGCTAAAAGCAATCTTAAGCCTGTAACTTTGGAGCTTGGTGGGAAATCCCCGTTTATTGTGTGTGAAGACGCTGATGTAGATCAGGCTGTTGAGCTAGCACACTTTGCTTTATTCTTTAATCAGGGACAATGTTGCTGTGCTGGGTCACGAACATTTGTACACGAAAGAGTGTACGATGAGTTTGTTGAGAAAGCAAAGGCTCGTGCTTTGAAACGTGTTGTTGGTGATCCATTCAAGGGGGGTATAGAGCAGGGTCCTCAGATTGATTCAGATCAGTTTGAGAAAATCCTGAGGTATATCAGATATGGTGTTGAAAGTGGGGCTACCCTTGAAACCGGAGGAGACAGACTTGGCAACAAGGGCTTCTATATTCAACCAACTGTGTTCTCAAATGTTAAGGACGACATGCGGATTGCAAAGGATGAAATATTTGGTCCAGTCCAATCCATATTAAAATTCAAGGACCTTGGTGAGGTAGTTCAAAGAGCAAATAACACACGTTATGGGCTTGCAGCAGGAGTGTTCACAAAGAACATAGACACTGCCAACATTTTGACTCGGGCACTGAGAGTAGGAACAGTTTGGGTAAATTGCTTTGACACATTCGATGCTGCAATCCCCTTTGGGGGTTACAAGATGAGTGGTCAGGGCAGAGAAAAAGGAGAGTATAGTCTCAAGAACTACTTGCAAGTGAAGGCTGTTGTTAACCCCTTGAACAACCCAGCATGGCTTTGA 1608 0.444 MASTLRISRLISRSFSSTSFFSRGGNSYLGSRLSKYSTAAAIEEPIKPSVQVEYNQLLIDGKFVDAASGKTFPTLDPRTGEVIAHVAEGHSEDVDRAVAAARKAFDHGPWPRMTAYERQRILLRAADLIEKHNDEIAALETWDNGKPYEQSAKIEIPMLVRLIRYYAGWADKIHGLTVPADGPYHVQTLHEPIGVAGQIIPWNFPLLMFAWKVGPALACGNTIVLKTAEQTPLSALYVAKLFLEAGLPPGVLNVISGFGPTAGAALASHMEVDKLAFTGSTDTGKVVLELAAKSNLKPVTLELGGKSPFIVCEDADVDQAVELAHFALFFNQGQCCCAGSRTFVHERVYDEFVEKAKARALKRVVGDPFKGGIEQGPQIDSDQFEKILRYIRYGVESGATLETGGDRLGNKGFYIQPTVFSNVKDDMRIAKDEIFGPVQSILKFKDLGEVVQRANNTRYGLAAGVFTKNIDTANILTRALRVGTVWVNCFDTFDAAIPFGGYKMSGQGREKGEYSLKNYLQVKAVVNPLNNPAWL 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2318g00001 535 CDD ALDH_F2BC 52 526 - -
Vium2318g00001 535 Pfam Aldehyde dehydrogenase family 63 525 IPR015590 GO:0016491
Vium2318g00001 535 FunFam Aldehyde dehydrogenase, putative 497 523 - -
Vium2318g00001 535 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 69 525 IPR016162 GO:0016491
Vium2318g00001 535 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 301 308 IPR029510 GO:0016491
Vium2318g00001 535 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 329 340 IPR016160 GO:0016491
Vium2318g00001 535 FunFam Mitochondrial aldehyde dehydrogenase 2 307 496 - -
Vium2318g00001 535 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 307 496 IPR016163 GO:0016620
Vium2318g00001 535 SUPERFAMILY ALDH-like 51 529 IPR016161 GO:0016491
Vium2318g00001 535 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 39 525 - -
Vium2318g00001 535 FunFam ALD5p Mitochondrial aldehyde dehydrogenase 59 317 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2318g00001 Vium-Chr2318 10059 13542 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2318g00001 6 535 Aldehyde Dehydrogenase Gene Family AT3G48000 78.464 0.0 889