Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2316g00001 ATGAGGCTACCAAGTTCAACCATCCAGCTTCTCTACCAAATTCTTCTTGTTTGTCTACTGAACAGACCCAGCTTTGCAGTGAAAAAGTCATATGTGGTGTACTTGGGAGCTCACTCACATGGCCCAGAATTATCTTCATCTTTCGTTGACTTCAATCAAGTGACACAGTCACACCATGAGTTTCTGGGATCTTACTTAGGAAGTCCTAATACAGCCAAGAACTCCATCTTTTACTCATACACAAGACACATCAATGGTTTTGCTGCCACTTTGGAAGAAGAAGTAGCTGCCGAGATAGCAAAGCACCCCAAAGTGCTATCAGTGTTTGAGAACAGAGGAAGAAAGCTACACACCACTCGATCATGGGAATTCATGGGGCTAGAGCATAAAGGCATGATCCCATCTGGGTCAATCTGGAAGAAAGCCAGATTTGGTGAAGGAGTCATAATTGGAAACCTGGATACAGGTGTTTGGCCTGAATCAAATAGCTTTAGTAAAGAAGGATTGGGACCAATTCCATCAAAGTGGAGAGGAATATGTGACAATGGACTTGATCATACTTTTCAATGCAACAGGAAGCTAATCGGTGCAAGGTACTTTAACAAGGGCTACGCCTCGGCAGTGGGCCCACTCAACTCTTCCTTTCAGTCCCCACGTGACAAGGAGGGCCATGGCTCCCATACTCTCTCCACAGCTGGTGGCAACGCCGTTCCTGGAGTTAGCGTCTTCGGCCAGGGCTTCGGAACAGCCAAGGGCGGCGCTCCCAAAGCCCGCGTGGCGGCGTACAAGGTCTGCTGGCCCCCCGTTGCCGATGATGAGTGCTTCGATGCTGATATCTTGGCCGCGTTTGACGAGGCCATCCACGACGGTGTGGACGTGCTGTCAGTGTCGCTCGGTGGGTCCGCCTCAAGCCTGCTCAATGACAGCGTAGCGATTGGATCATTCCATGCCGCGAGTCGAGGAATCGTGGTGGTTTGCTCCGCCGGGAATAGTGGGCCTGCCGATGCCACTGTGAGAAATCTTGCACCCTGGCATGTCACGGTTGCCGCCAGCACCATGGATAGAGAATTCCCAGCTTATGTTGTCCTCGGTAACAATATCACCTTGAAGGGTGAAAGCTTATCAGCTGCAAGATTGGCACACAAGTTGTACCCAATTATTAAAGCTACATATGCTAAATTGGACAGTGCAAGAACAGAAGACGCGGTGCTGTGTCAGAACGGGACCTTGGATCCCAACAAGGTGAAGGGAAAGATCGTGATATGTCTCCGAGGGATAAATGCGAGAGTGGACAAAGGAGAGCAAGCTTTACTAGCTGGTGCCGTGGGAATGGTCCTTGCTAATAACATGGCCAGTGGCAATGAAATTATAGCTGATCCTCATGTTCTTCCTGCTTCTCATATCAATTTCACTGACGGCATTTCTGTCTTCAATTACGTCAACTCAACCAAGTTCCCAGTGGCGTATATTACACATCCAAAGACTCAATTGGGTACTAAGCCAGCACCGTTCATGGCTGCTTTTTCATCTAAAGGGCCAAATACTGTCGTGCCAGAGATCCTAAAGCCTGATGTCACCGCACCGGGAGTGTCAATTATAGCAGCCTATACTAAAGCCCAAGGACCAACCAATCAAGTGTTTGATAAGCGCCGGATTTCGTATAATTCAGTGTCAGGAACATCAATGTCGTGCCCTCATGTTTCAGGCATTGCGGCACTGTTGAGAGCCTCGTATCCTTCGTGGAGTCCTGCTGCTATTAAATCAGCAATCATGACCACAGCCACAACACTTGATAATGAAGTGGAGCCTCTGCTGAATGCTACTGATGGCATGGCAACACCATTCAGTTACGGGGCAGGACATGTACAACCAAACATAGCAATGGATCCCGGGTTAGTTTATGACACAACAATTGGTGATTACCTAAACTTCTTATGTGCTTTAGGATACAACGGGACACAGATCTCAGTGTTCACAGAAGGTTCATCATATGTGTGCCGCAAGAAATTTAGTCTCCTCAACCTGAACTATCCCTCAATCACTGTTCCGAATCTCTCTGGGTCAGTGACTGTTACGAGGACATTGAAGAATGTTGGTTCTCCAAGCACGTACATTGCTCACGTTCAAAACCCGAATGGGATCTCTGTTTCTGTGAAGCCAAGCATCTTGAAGTTCACAAATGTTGGTGAAGAAAAACGCTTTAAAGTAACCTTTAAGATCATGAAAGGAAAGGCTACGAATAACTACGTGTTTGGAAAACTGATATGGTCAGATGGCAGACATTATGTCAGGAGTCCAATAGTTGTGAAGGCTCTCACGAGTAGAAATTGA 2331 0.474 MRLPSSTIQLLYQILLVCLLNRPSFAVKKSYVVYLGAHSHGPELSSSFVDFNQVTQSHHEFLGSYLGSPNTAKNSIFYSYTRHINGFAATLEEEVAAEIAKHPKVLSVFENRGRKLHTTRSWEFMGLEHKGMIPSGSIWKKARFGEGVIIGNLDTGVWPESNSFSKEGLGPIPSKWRGICDNGLDHTFQCNRKLIGARYFNKGYASAVGPLNSSFQSPRDKEGHGSHTLSTAGGNAVPGVSVFGQGFGTAKGGAPKARVAAYKVCWPPVADDECFDADILAAFDEAIHDGVDVLSVSLGGSASSLLNDSVAIGSFHAASRGIVVVCSAGNSGPADATVRNLAPWHVTVAASTMDREFPAYVVLGNNITLKGESLSAARLAHKLYPIIKATYAKLDSARTEDAVLCQNGTLDPNKVKGKIVICLRGINARVDKGEQALLAGAVGMVLANNMASGNEIIADPHVLPASHINFTDGISVFNYVNSTKFPVAYITHPKTQLGTKPAPFMAAFSSKGPNTVVPEILKPDVTAPGVSIIAAYTKAQGPTNQVFDKRRISYNSVSGTSMSCPHVSGIAALLRASYPSWSPAAIKSAIMTTATTLDNEVEPLLNATDGMATPFSYGAGHVQPNIAMDPGLVYDTTIGDYLNFLCALGYNGTQISVFTEGSSYVCRKKFSLLNLNYPSITVPNLSGSVTVTRTLKNVGSPSTYIAHVQNPNGISVSVKPSILKFTNVGEEKRFKVTFKIMKGKATNNYVFGKLIWSDGRHYVRSPIVVKALTSRN 776
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2316g00001 776 CDD Peptidases_S8_3 115 595 IPR034197 -
Vium2316g00001 776 FunFam Subtilisin-like protease SBT5.3 20 117 - -
Vium2316g00001 776 Pfam Fibronectin type-III domain 674 769 IPR041469 -
Vium2316g00001 776 FunFam Subtilisin-like protease SBT1.5 147 371 - -
Vium2316g00001 776 FunFam subtilisin-like protease SBT1.5 354 497 - -
Vium2316g00001 776 Gene3D - 354 498 - -
Vium2316g00001 776 Pfam Peptidase inhibitor I9 30 117 IPR010259 -
Vium2316g00001 776 SUPERFAMILY Subtilisin-like 116 632 IPR036852 GO:0004252|GO:0006508
Vium2316g00001 776 CDD PA_subtilisin_like 360 490 - -
Vium2316g00001 776 ProSiteProfiles Serine proteases, subtilase domain profile. 121 628 - -
Vium2316g00001 776 ProSitePatterns Serine proteases, subtilase family, serine active site. 559 569 IPR023828 -
Vium2316g00001 776 Gene3D Peptidase S8/S53 domain 147 641 IPR036852 GO:0004252|GO:0006508
Vium2316g00001 776 PRINTS Subtilisin serine protease family (S8) signature 558 574 IPR015500 -
Vium2316g00001 776 PRINTS Subtilisin serine protease family (S8) signature 145 164 IPR015500 -
Vium2316g00001 776 PRINTS Subtilisin serine protease family (S8) signature 220 233 IPR015500 -
Vium2316g00001 776 Pfam PA domain 405 473 IPR003137 -
Vium2316g00001 776 Gene3D - 645 772 - -
Vium2316g00001 776 Pfam Subtilase family 145 604 IPR000209 GO:0006508|GO:0008236
Vium2316g00001 776 FunFam Subtilisin-like protease SBT1.5 645 772 - -
Vium2316g00001 776 SUPERFAMILY PA domain 398 488 IPR046450 -
Vium2316g00001 776 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 21 117 IPR037045 -
Vium2316g00001 776 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 68 769 IPR045051 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2316g00001 Vium-Chr2316 33991 44518 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2316g00001 30 770 Subtilisin-like Serine Gene Family AT2G04160 64.919 0.0 1004
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2316g00001 - - gmx:100794807 1338.94