Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2313g00016 ATGAAAGCTCCTCACTTGAGCTTCTTCTACTTCTACATCATCCTCCTCACACTGTTCCTCTTCCTATCCATACCAGTCAACACTGCAAAAAGGGTCAATAGTAATACCAGCGCTAATGAATCTGGTACAAGAAGAATTCTGCACCAGCCATTGTTCCCGGCGAGTTCGGCACCACCGCCACCACTTCCGGTGGAGAGTCCTCCATCGCCGGAAGGCGGAAACATCCCCTTCTTCCACGAGTACCCGGCGGGGCCCCCACCGGATCAGAGCCAAGCAGCCCCGTCCAATTCCAACACTTCAATTGCAAACCCAACTGCAACACAACCCGCAAAGGGAACAAAGAAGGTAGCAATCGCGATCTCAGTGGGGATTGTGACCCTTGGAATGCTATCAGCGTTGGCCTTCTTTTTGTACAAACACAGAGCCAAACACCCAGTGGAGTCTCAGAAACTGGTCGCTGGGAGTGGGAATACCAATAACAATAGCCATATCTCAAACAGAAACGAGGTTGATTCAACTGCGCCACCGTCGAGTTTCCTCTACATTGGGACAGTGGAACCCACGCGAGCCTCTACCAACGACTCGCGAGACAACAGAGATGTTAATAAGGCCAACAGATCGCCGTATCACAAGCTCAAGCGATCCGATCGCTACCGTCCAAGTCCTGAGTTGCAGCCAATGCCACCGCTCAGTAAGCCTCCCGACGGAAACTACCCGCCGGCGGTCTCCTCCTCATCGGAGTCCGATGAGGAAAGCCGCGGCACGGTGTTTCACTCGCCGCAGAACTCGTCGGTCGATGGGTACTACACGCCGGCTTCGCGGCAGAGCTCTCTTGTCAACGGTAGTCCCGCGAAGCGTGACACGAATTCCACGCCCACACCCGTTGTTCCGTTTTCCAAGAGAACTTCGCCCAAGTCACGCGTTTCGGCACCCTCGCCGGAGATACGCCGTGTCATCATTCCGTCGATAAAGCAGCCCCCTCCACCGTCGCCGCCGCTACCTAAGCATTCCAGAAAACCGAAATTTTCGGCGCCTCCCCCACCTCCGAATTTGAAGCATCTTCAGTCAACAACCGACACTGTTTCGCACGTGTCAAATACTTTACTCAATCCTCCTCCACCACCTCCACCTCCGCCTCCTCCACCGCCGCCGCGAAAATCAGAGTCTCCGGCTGTTAGTGTCTCCTCTAATTCTGCATCTGTAAAGAGGCAGTCTTTGTCACCAATTGAAGGTAGTGTGACGAAAGGTTCAGAAGAGGTTGAACAGAGTGTGAGTTCTTCCGAGAGGCTTGAAGCCAATGACAGGGATGGAGCCAAACCAAAATTAAAGGCTCTGCATTGGGATAAAGTGCGTGCGACCTCAGACCGTGCTACAGTGTGGGACCAGATAAAATCAAGCTCGTTTCAGTTAAATGAAGACATGATGGAATCGTTGTTTGGATGCAAAGCCACGAATTCTGCTCCGAAAGAACCTCCCAGAAAATCAGTTTTTCCTTCTGTTGATCAGGAGAACAGGGTGTTAGACCCGAAGAAGTCACAGAACATAGCTATACTGCTCAGGGCTTTGAATGTGACCAGAGAGGAGGTGTCTGAAGCTCTTTTAGATGGGAATCCCGAAGGTTTGGGCACTGAGCTATTGGAAACACTAGTAAAGATGGCTCCGACTAAAGAGGAAGAGATAAAGCTTAAAAACTACGATGGTGATCTCTCAAAACTGGGATCTGCAGAAAGGTTTCTTAAAGCAGTGCTTGATATCCCTTTTGCCTTTAAAAGAGTTGAAGCTATGCTCTATAGAGCCAACTTTGATGCAGAAATTAACTACCTTAGAAAGTCTTTTCAAACCATGGAGGCTGCAAGTGATGAATTAAAGAACAGCCGCTTATTCCTCAAACTCCTTGAAGCTGTTCTAAGGACGGGAAACAGAATGAATGTTGGCACTAATCGAGGGGATGCTAAAGCTTTCAAACTGGAGACACTCTTGAAACTAGTAGATATAAAAGGAACAGATGGAAAAACCACATTGCTCCACTTTGTGGTTCAAGAGATCATTAGATCCGAAGGTGCAGGAGCTGAATCTGCAAATGAGAATGTGAAAATGGATTCCAAATTTAATGAGGATGAGTTTAAGAAGCAAGGATTGCAGGTTGTGGCAGGGCTCAGTAGAGATCTTAGTAATGTAAAAAAGGCAGCTGGAATGGATTCAGATGTCTTGAGCAGCTATCTTTCAAAGCTTGAAACAGGACTTGATAAAGTGCGATTGGTTTTGCAATATGAAAAGCCAGATGTGCTTGGCAATTTCTTTAACTCTACGAAGCTATTTCTGAAATATGCTGAAGATGAAATTGTAAGGATTAAAGCGGATGAGAGAAAAGCTTTGTACCTTGTAAAAGAAGTCACCGAATACTTTCATGGGAATGCAGCAAAGGAAGAAGCCCACCCTCTCAGAATTTTCATGATTGTGAGAGACTTTCTGAGTATTTTGGATCTAGTGTGCAAAGAAGTGGAAAAAATGCATGATAAAATTGTTGGTGGTTCTGGCAGATCTTTCCGAATACCTCCAAATGTATCATTACCTGTTCTCAATAGGAACAACCATCCAAAGCAGGATAGAAGCTCAGACGAGGAAAGTTCATCCCCCTAG 2640 0.475 MKAPHLSFFYFYIILLTLFLFLSIPVNTAKRVNSNTSANESGTRRILHQPLFPASSAPPPPLPVESPPSPEGGNIPFFHEYPAGPPPDQSQAAPSNSNTSIANPTATQPAKGTKKVAIAISVGIVTLGMLSALAFFLYKHRAKHPVESQKLVAGSGNTNNNSHISNRNEVDSTAPPSSFLYIGTVEPTRASTNDSRDNRDVNKANRSPYHKLKRSDRYRPSPELQPMPPLSKPPDGNYPPAVSSSSESDEESRGTVFHSPQNSSVDGYYTPASRQSSLVNGSPAKRDTNSTPTPVVPFSKRTSPKSRVSAPSPEIRRVIIPSIKQPPPPSPPLPKHSRKPKFSAPPPPPNLKHLQSTTDTVSHVSNTLLNPPPPPPPPPPPPPPRKSESPAVSVSSNSASVKRQSLSPIEGSVTKGSEEVEQSVSSSERLEANDRDGAKPKLKALHWDKVRATSDRATVWDQIKSSSFQLNEDMMESLFGCKATNSAPKEPPRKSVFPSVDQENRVLDPKKSQNIAILLRALNVTREEVSEALLDGNPEGLGTELLETLVKMAPTKEEEIKLKNYDGDLSKLGSAERFLKAVLDIPFAFKRVEAMLYRANFDAEINYLRKSFQTMEAASDELKNSRLFLKLLEAVLRTGNRMNVGTNRGDAKAFKLETLLKLVDIKGTDGKTTLLHFVVQEIIRSEGAGAESANENVKMDSKFNEDEFKKQGLQVVAGLSRDLSNVKKAAGMDSDVLSSYLSKLETGLDKVRLVLQYEKPDVLGNFFNSTKLFLKYAEDEIVRIKADERKALYLVKEVTEYFHGNAAKEEAHPLRIFMIVRDFLSILDLVCKEVEKMHDKIVGGSGRSFRIPPNVSLPVLNRNNHPKQDRSSDEESSSP 879
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2313g00016 879 MobiDBLite consensus disorder prediction 389 421 - -
Vium2313g00016 879 MobiDBLite consensus disorder prediction 150 437 - -
Vium2313g00016 879 MobiDBLite consensus disorder prediction 222 236 - -
Vium2313g00016 879 SUPERFAMILY Formin homology 2 domain (FH2 domain) 373 838 - -
Vium2313g00016 879 MobiDBLite consensus disorder prediction 192 220 - -
Vium2313g00016 879 MobiDBLite consensus disorder prediction 322 352 - -
Vium2313g00016 879 PANTHER FORMIN-RELATED 17 873 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Vium2313g00016 879 MobiDBLite consensus disorder prediction 238 309 - -
Vium2313g00016 879 MobiDBLite consensus disorder prediction 50 113 - -
Vium2313g00016 879 MobiDBLite consensus disorder prediction 422 437 - -
Vium2313g00016 879 MobiDBLite consensus disorder prediction 853 879 - -
Vium2313g00016 879 MobiDBLite consensus disorder prediction 353 367 - -
Vium2313g00016 879 ProSiteProfiles Formin homology-2 (FH2) domain profile. 432 853 IPR015425 -
Vium2313g00016 879 SMART it6_source 432 842 IPR015425 -
Vium2313g00016 879 MobiDBLite consensus disorder prediction 151 191 - -
Vium2313g00016 879 MobiDBLite consensus disorder prediction 368 388 - -
Vium2313g00016 879 Pfam Formin Homology 2 Domain 437 827 IPR015425 -
Vium2313g00016 879 Gene3D Formin, FH2 domain 427 839 IPR042201 -
Vium2313g00016 879 MobiDBLite consensus disorder prediction 90 110 - -
Vium2313g00016 879 MobiDBLite consensus disorder prediction 53 70 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2313g00016 Vium-Chr2313 109726 115450 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2313g00016 35 869 FH2 protein (formin) Gene Family AT5G67470 57.350 0.0 837
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2313g00016 - - gmx:100798670 1323.92