Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2313g00015 ATGCCACGTTCAATATCAATCAATTCATTTTACGATTGTAAGACATCTTATAATTCAAAACCAAGAACACAAAACAACAACGACTCTTCGTCAAGAAAGGATTTGTGGGAGCGCCTTTTCTATCAAGGTTATAAAGCAGATGTTTGCATTAACACTAACAGTGGTGATGTTGTTTATGCTCATTCTAACATTATTGCCATGGCTTCTCCTGTTTTAAAAGGCATGCTAAAGCAAGCACATCGACATGGACGATGGCGAAAAATATCAATCATTGGGGTTCCACATGATGCAGTTCAAGTTTTTATTCGATATTTGTACACTTTTAGATACGAGAAAGAAGATATGGATGAATTTGTTCTACATTTGTTGGTGTTGTCACATGTATACATGGTTCCTCACTTAAAGTGTGAATGTGAACAAAGACTAGAATTGGGTTTACTCACCATGGATAACTTGGTTGACGTGTTTCAACTAGCGTTGTTATGTGATGTTCCAAGACTTAGTCTCATTTGTCATCGCAAGATATTGAAAAACTTCAAAGTTGTTTCAGAGTCAGAAGGATGGAAAGCAATGAAGTTGAGTCACCCACTTCTAGAAAAGGAAATTCTAGAGTCAATGATCAATGAAGAAACTATAAAAAAGGAAAGAATCAGAAAAATGAATGAAAAAAAGGTATATCTACAATTGTATGAGGCCATGGAAGCTCTTGTTCACATATGTAAAGATGGTTGTCGAACTATTGGTCCTTATGATAAAGATCTTCAAGCAAACCAACCATGTAAGTATTCAGCATGCAACGGATTAGAGTTGCTTGTTCGTCATTTTGCTGCATGTAAGTTGAGAGTTCCCGGAGGATGTGTTCATTGCAAGAGGATGTGGCAATTATTCGAGTTACATTCTCGATTATGTGTTAATCCGGACGATTGTAGAGTTCCTTTATGCAGGAACTTTAAGGAACGAATATCAAAACAAAGCAAGAAAGATGAAATTAGGTGGAAAATTTTGGTTGAAAATATCTTGAGAACAAGAGGAATCAAGATAGCATCATGTTTTTTGCAACAATGA 1065 0.3587 MPRSISINSFYDCKTSYNSKPRTQNNNDSSSRKDLWERLFYQGYKADVCINTNSGDVVYAHSNIIAMASPVLKGMLKQAHRHGRWRKISIIGVPHDAVQVFIRYLYTFRYEKEDMDEFVLHLLVLSHVYMVPHLKCECEQRLELGLLTMDNLVDVFQLALLCDVPRLSLICHRKILKNFKVVSESEGWKAMKLSHPLLEKEILESMINEETIKKERIRKMNEKKVYLQLYEAMEALVHICKDGCRTIGPYDKDLQANQPCKYSACNGLELLVRHFAACKLRVPGGCVHCKRMWQLFELHSRLCVNPDDCRVPLCRNFKERISKQSKKDEIRWKILVENILRTRGIKIASCFLQQ 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2313g00015 354 ProSiteProfiles Zinc finger TAZ-type profile. 220 317 IPR000197 -
Vium2313g00015 354 ProSiteProfiles BTB domain profile. 46 114 IPR000210 GO:0005515
Vium2313g00015 354 FunFam BTB/POZ and TAZ domain-containing protein 2 148 218 - -
Vium2313g00015 354 Gene3D - 147 221 - -
Vium2313g00015 354 Gene3D Potassium Channel Kv1.1; Chain A 14 146 IPR011333 -
Vium2313g00015 354 FunFam BTB/POZ and TAZ domain-containing protein 2 220 344 - -
Vium2313g00015 354 PANTHER BTB/POZ AND TAZ DOMAIN-CONTAINING PROTEIN 3-RELATED 23 349 IPR044513 -
Vium2313g00015 354 Gene3D TAZ domain 222 342 IPR035898 -
Vium2313g00015 354 SMART TAZ_2 223 315 IPR000197 -
Vium2313g00015 354 SMART BTB_4 46 146 IPR000210 GO:0005515
Vium2313g00015 354 Pfam BTB/POZ domain 42 142 IPR000210 GO:0005515
Vium2313g00015 354 Pfam TAZ zinc finger 230 314 IPR000197 -
Vium2313g00015 354 CDD BACK 150 205 - -
Vium2313g00015 354 SUPERFAMILY TAZ domain 223 323 IPR035898 -
Vium2313g00015 354 SUPERFAMILY POZ domain 24 142 IPR011333 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2313g00015 Vium-Chr2313 98118 100365 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TAZ Vium2313g00015 BTB 2.5e-10 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2313g00015 - - var:108334777 724.931