Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2313g00013 ATGGAGGGTTATTTGAATGAGAATTTTGAAGTAAAGCCCAAAAGGTCTACTGAAGAGGCTCTTCAGAGATGGAGGAAACTGTGCGGGTTTGTCAAGAACCCCAAAAGACGTTTTCGTTTCACAGCCAATCTCCCCATGAGAGACAAAGCTGCTGCTATGCGTCGTACCAATCAGGAGAAGCTGAGGATTGCAGTTTTGGTTTCCAAAGCAGCTATTCAATTTATCCAAAGCGTGCAACTAAGCGATTACAAAGTTCCAGAGGAAGTTAAAGCTGCAGGTTATCAAATCTGTGGCGATGAATTGGGGTGTATAGTTGAAGGCCATGATGTAAAGAAGTTCAGACTTCATGGTGGGGTTAATGGCATTGCAGAGAAGCTTTCTACATCAACCACTGAGGGGCTTAACAGTGACAGCGAGTCATTGAATAGGAGACAGCAGATATATGGAATCAACAAATTTACTGAAAGTGAAGCTACAAGTTTCTGGGTTTTTGTTTGGGAAGCCTTTCAAGACATGACTCTGATGATACTTGGAGTGTGTGCTATTGTGTCACTATTAGTTGGCATTGCAACTGAAGGATGGCCGAAGGGAGCTCATGATGGTCTTGGAATTGTTGCAAGTATCTTACTTGTTGTTTTTGTGACAGCAACAAGTGATTATCGCCAATCATTGCAATTCAAGGATTTAGACAAGGAGAAGAAGAAAATATCCATTCAGGTCACAAGAAATGGATACAGGCAGAAAATGTCTATATATGAATTACTTCCGGGCGACATTGTGCATCTTGCCATTGGTGATCAAGTCCCTGCTGATGGACTCTTTGTTTCAGGATTTTCTGTGTTGATTGATGAGTCAAGCTTAACAGGCGAGAGTGAGCCAGTTATGGTGAATTCTGAATATCCATTTCTTCTTTCTGGAACCAAGGTCCAAGATGGATCATGCAAGATGTTGATTACCAGTGTTGGCATGAGGACCCAATGGGGTAAGTTGATGGCTACTCTCAGTGAAGGTGGAGATGATGAAACCCCGCTACAGGTGAAGCTGAACGGTGTTGCTACCATTATCGGGAAGATAGGTCTATTCTTTGCCGTGGTTACTTTTGCAGTTCTGGTGCAAGGACTTGTAAGCAAAAAACTCCAAGAAGGAAGCTTGTCGAGCTGGAATGGGGATGATGCGTTGGAGCTGTTAGAGTTCTTTGCAGTTGCAGTCACTATAGTTGTCGTTGCCGTTCCAGAGGGGTTGCCATTAGCTGTGACATTGAGCCTTGCATTTGCTATGAAGAAAATGATGAATGACAAAGCCCTTGTGAGACATTTGGCAGCCTGTGAGACCATGGGATCAGCCACAACTATATGTAGTGACAAGACTGGGACACTAACAACGAACCACATGACTGTTGTGAAAACATGCTTTTGCATGAATAGCAAGGAAGTGAGCAATAATAAGACCTCTGGTTTGTGTTCTGAACTCCCAGAATCTGCTGTGAAACTGCTGCTGCAGTCAATATTCAATAATACAGGAGGAGAGGTTGTGGTTAACCAAAACGGAAAACGTGAGATTTTAGGAACTCCAACTGAGGCTGCAATATTGGAGTATGGTTTGTCTTTAGGTGGAGATTTTCAAGGAGAGAGACAAGCATGTAATCTTGTTAAAGTTGAGCCATTCAATTCCACGAAGAAAAAAATGAGTGTGGTGGTTGAGCTCCCTGATGGAGGCTTAAGAGCCCACTGCAAAGGTGCTTCCGAGATAATTCTGGCTGCTTGTGACAAAGTTCTCAACTCAAATGGCGAGGTTGTACCCCTTGATGAAGAATCAACGGGCCATCTTCAGGCCACAATAAACCAGTTTGCAAGTGAGGCACTTAGAACACTATGCCTTGCTTATGTGGAATTGGAAGACGGGTTCTCTCCTGAAGACCCTATTCCTGCTTCTGGATATACTTGCATAGGAGTTGTTGGTATAAAAGATCCTGTTCGTCCTGGTGTTAAGGAATCTGTGGCAGTGTGTCGCTCAGCTGGAATAACAGTACGAATGGTTACTGGGGACAACATTAACACTGCAAAGGCTATAGCCAGGGAGTGTGGAATTTTAACTGATGACGGCATAGCAATTGAAGGACCAGAGTTTAGAGAGAAGAGTGAGAAGGAGTTGCTTGAACTGATTCCCAAAATTCAGGTTATGGCTCGATCTTCACCTTTGGACAAACATACATTGGTGAAACACTTGCGCACCACGTTTGGGGAAGTGGTAGCCGTAACAGGTGATGGAACTAACGATGCCCCAGCCCTTCATGAAGCTGACATTGGACTTGCAATGGGCATTGCAGGAACTGAGGTCGCAAAAGAAAGCGCAGATGTCATAATTCTGGATGATAACTTCTCCACGATAGTAACAGTGGCCAAATGGGGACGTTCAGTTTACATAAATATTCAGAAGTTCGTACAGTTTCAGCTGACCGTTAATGTGGTTGCATTAATAGTAAACTTCACGTCAGCTTGCTTGACAGGAACCGCGCCCCTCACAGCTGTTCAACTTTTGTGGGTGAACATGATAATGGACACACTGGGAGCACTTGCGCTTGCTACTGAACCTCCAAATGATGATTTAATGAAACGCACACCTGTTGGAAGGAAGGGGAATTTCATCAGCAACGTCATGTGGAGGAACATCTTGGGACAATCCTTGTATCAGTTTATGGTGATATGGTTTCTTCAGTCAAGAGGAAAATCAATCTTTTTACTTGACGGCCCCAATTCGGACCTTGTCTTAAACACGCTTATTTTCAACTCATTTGTCTTCTGTCAGGTTTTCAATGAGATAAATTCACGTGAAATGGAGAAAATAAACGTTTTCAAAGGCATATTGGATAATTATGTTTTCGTGGGTGTGATCAGCGCTACAGTTTTCTTCCAAATCGTAATAGTTGAGTACTTGGGAACCTTCGCAAACACAACACCTCTCACCCTGACACAGTGGTTCTTTTGCTTATTCGTTGGATTTTTGGGCATGCCAATTGCTGCTCGCTTAAAGAAGATCCCTGTTTGA 3045 0.4342 MEGYLNENFEVKPKRSTEEALQRWRKLCGFVKNPKRRFRFTANLPMRDKAAAMRRTNQEKLRIAVLVSKAAIQFIQSVQLSDYKVPEEVKAAGYQICGDELGCIVEGHDVKKFRLHGGVNGIAEKLSTSTTEGLNSDSESLNRRQQIYGINKFTESEATSFWVFVWEAFQDMTLMILGVCAIVSLLVGIATEGWPKGAHDGLGIVASILLVVFVTATSDYRQSLQFKDLDKEKKKISIQVTRNGYRQKMSIYELLPGDIVHLAIGDQVPADGLFVSGFSVLIDESSLTGESEPVMVNSEYPFLLSGTKVQDGSCKMLITSVGMRTQWGKLMATLSEGGDDETPLQVKLNGVATIIGKIGLFFAVVTFAVLVQGLVSKKLQEGSLSSWNGDDALELLEFFAVAVTIVVVAVPEGLPLAVTLSLAFAMKKMMNDKALVRHLAACETMGSATTICSDKTGTLTTNHMTVVKTCFCMNSKEVSNNKTSGLCSELPESAVKLLLQSIFNNTGGEVVVNQNGKREILGTPTEAAILEYGLSLGGDFQGERQACNLVKVEPFNSTKKKMSVVVELPDGGLRAHCKGASEIILAACDKVLNSNGEVVPLDEESTGHLQATINQFASEALRTLCLAYVELEDGFSPEDPIPASGYTCIGVVGIKDPVRPGVKESVAVCRSAGITVRMVTGDNINTAKAIARECGILTDDGIAIEGPEFREKSEKELLELIPKIQVMARSSPLDKHTLVKHLRTTFGEVVAVTGDGTNDAPALHEADIGLAMGIAGTEVAKESADVIILDDNFSTIVTVAKWGRSVYINIQKFVQFQLTVNVVALIVNFTSACLTGTAPLTAVQLLWVNMIMDTLGALALATEPPNDDLMKRTPVGRKGNFISNVMWRNILGQSLYQFMVIWFLQSRGKSIFLLDGPNSDLVLNTLIFNSFVFCQVFNEINSREMEKINVFKGILDNYVFVGVISATVFFQIVIVEYLGTFANTTPLTLTQWFFCLFVGFLGMPIAARLKKIPV 1014
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2313g00013 1014 SUPERFAMILY Calcium ATPase, transmembrane domain M 117 1013 IPR023298 -
Vium2313g00013 1014 Pfam Cation transporter/ATPase, N-terminus 117 184 IPR004014 -
Vium2313g00013 1014 SUPERFAMILY Calcium ATPase, transduction domain A 238 332 IPR008250 -
Vium2313g00013 1014 Pfam E1-E2 ATPase 236 430 - -
Vium2313g00013 1014 Pfam Cation transport ATPase (P-type) 513 591 - -
Vium2313g00013 1014 Pfam Cation transporting ATPase, C-terminus 838 1011 IPR006068 -
Vium2313g00013 1014 SUPERFAMILY HAD-like 450 858 IPR036412 -
Vium2313g00013 1014 NCBIfam HAD-IC family P-type ATPase 724 839 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vium2313g00013 1014 NCBIfam HAD-IC family P-type ATPase 394 476 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vium2313g00013 1014 SFLD Haloacid Dehalogenase 434 805 - -
Vium2313g00013 1014 SMART Cation_ATPase_N_a_2 114 189 IPR004014 -
Vium2313g00013 1014 CDD P-type_ATPase_Ca_PMCA-like 141 886 - -
Vium2313g00013 1014 SFLD p-type atpase 434 805 IPR044492 -
Vium2313g00013 1014 Pfam Ca2+-ATPase N terminal autoinhibitory domain 5 47 IPR024750 GO:0005516
Vium2313g00013 1014 NCBIfam calcium-translocating P-type ATPase, PMCA-type 109 1014 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Vium2313g00013 1014 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 458 662 IPR023299 GO:0000166
Vium2313g00013 1014 FunFam Calcium-transporting ATPase 462 657 - -
Vium2313g00013 1014 Gene3D - 167 1002 - -
Vium2313g00013 1014 FunFam Calcium-transporting ATPase 770 1014 - -
Vium2313g00013 1014 Gene3D - 16 76 - -
Vium2313g00013 1014 PANTHER CATION TRANSPORTING ATPASE 79 1013 - -
Vium2313g00013 1014 ProSitePatterns E1-E2 ATPases phosphorylation site. 454 460 IPR018303 -
Vium2313g00013 1014 FunFam Calcium-transporting ATPase 16 76 - -
Vium2313g00013 1014 FunFam Calcium-transporting ATPase 215 335 - -
Vium2313g00013 1014 FunFam Calcium-transporting ATPase 646 798 - -
Vium2313g00013 1014 Gene3D - 449 798 IPR023214 -
Vium2313g00013 1014 Gene3D - 138 335 - -
Vium2313g00013 1014 PRINTS H+-transporting ATPase (proton pump) signature 785 810 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vium2313g00013 1014 PRINTS H+-transporting ATPase (proton pump) signature 753 769 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vium2313g00013 1014 PRINTS H+-transporting ATPase (proton pump) signature 609 627 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vium2313g00013 1014 Gene3D - 462 657 IPR023299 GO:0000166
Vium2313g00013 1014 PRINTS P-type cation-transporting ATPase superfamily signature 283 297 - -
Vium2313g00013 1014 PRINTS P-type cation-transporting ATPase superfamily signature 650 661 - -
Vium2313g00013 1014 PRINTS P-type cation-transporting ATPase superfamily signature 452 466 - -
Vium2313g00013 1014 PRINTS P-type cation-transporting ATPase superfamily signature 672 682 - -
Vium2313g00013 1014 PRINTS P-type cation-transporting ATPase superfamily signature 777 789 - -
Vium2313g00013 1014 PRINTS P-type cation-transporting ATPase superfamily signature 753 772 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2313g00013 Vium-Chr2313 81502 86872 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2313g00013 1 1014 Primary Pumps ATPases AT4G37640 81.872 0.0 1719
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2313g00013 K01537 - gmx:547567 1872.44