Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2313g00003 ATGGGGAAGAAGCAACACAGTAAAGACAGGATGTTCATCACCAAAACAGAGTGGGCAACGGAATGGGGAGGCGCTAAATCCAAAGACAGTCGCACTCCCTTCAAACGTCTTCCCTTCTATTGCTGCGCGCTTACGTTTACACCCTTTGAAGAACCTGTCTGCACTGCTGAGGGCAGTGTTTTCGATATCATGAATATTACTCCCTATATTATAAAATACGGTAAACATCCAGTCACTGGAACTCCTCTCAAGCTGCCGGATCTCATTCCACTAACTTTCCACAAGAATTCAGAAGGAGAATATCATTGTCCAGTGCTAAACAAAGTTTTCACTGAATTTACGCATATTGTGGCAGTGAAGACTACGGGAAATGTGTTCTGCTATGAGGCTGTCAAAGAGTTAAACATTAAGACAAAAAACTGGAAGGAGCTCCTCACCGATGAGCCATTCACAAGGAATGACCTTATAACCATTCAGAATCCTAATGCACTTGACGACAGGGTTCTTCTGGATTTTGATCATGTTAAGAATGATTTGAAAGTTGATGATGAGGAACTACAGAAAATGAGTTCAGATCCAACCTATAACATAAACATGTCGGGTGATATCAAGCAAATGCTTCAGGAGCTTGGAACTGATAAAGGAAAGGAAACTGCAATGCATGGGGGTGGTGGTGGCAAGGCACAAAAAGAAAGGGCTGCTGCACTTGCTGCCATCATAGCTGCAAGGTCCCGTGTGGATGAAGATTCCAAATCAAATGCAAATAAAGATGCCAAAGCTCCTCAGGCATTCAGTATCGTAGATGCTGCATCAGCTGCAGTACATGGAAGAAGTGCAGCTGCTGCTAAAGCCTCATCAGGTGATAAAACTGCTGCTAGGATAGCTATGCATATGTCTGGTGACAGGGCGCCAGTGAATGCAAAGATGGTAAAAAGCCGTTTCACAACTGGTGCTGCTTCCCGGTCTTTTACTTCAACATCATTTGATCCAGTTACAAAAAATGAATTTGAATATGTGAAAGTTGAGAAGAATCCAAAAAAGAAGGGTTATGTACAGCTGCATACGACACATGGTGATTTGAACATTGAGCTACATTGTGATATAACACCTAGGACGTGTGAAAACTTCATCACTCTTTGTGAGCGGGGATTTTATAATGGAGTTGCTTTTCATCGAAGCATTAGGAATTTTATGATACAGGGTGGGGATCCTACTGGTACTGGTCGAGGAGGTGAATCTATATGGGGAAAGCCTTTTAAAGATGAACTTAACTCCAAACTAGTTCACTCTGGAAGAGGTGTGGTAAGCATGGCGAATAGTGGCCCACACACCAATGGTTCCCAATTCTTCATCTTGTACAAGTCTGCAAATCATCTAAACTTCAAACATACAGTTTTTGGAGTAGTTGTAGGTGGCTTGACCACACTTGCTGCCATGGAAAAGGTTCCAGTTGATGATAATGACCGACCTCTGGAGGAAATCAAGATAACAAGTGTCACGATTTTTGTCAATCCTTACACGGAACCAGATGAAGGAGAAGAGCATGATAATGCCACAGAGAAGAATGTAGAGGATGAGGATAATGGTAAGGTAGGCTCATGGTTTAGCAATCCTGGTGCTGGAACATCTGAATCTGGAAGTACGGGGGTCGGTGGTGGTGTCGGCAAGTACTTGAAAGCTAGGAATGCTCAAGCTACATCTGCTAATCTTGATACCAGTACAGCTGTTGTAGGAAAGAAAAGAAAAGTGGGAGTTGCCAGCAGTGACTTTAAAGATTTTTCTGCATGCTCTGTACCATGCTTTCTGGGAGCATTATCAATCCGATCGACTTTTGCTTGCTTGCAGGGAACTTAA 1854 0.4299 MGKKQHSKDRMFITKTEWATEWGGAKSKDSRTPFKRLPFYCCALTFTPFEEPVCTAEGSVFDIMNITPYIIKYGKHPVTGTPLKLPDLIPLTFHKNSEGEYHCPVLNKVFTEFTHIVAVKTTGNVFCYEAVKELNIKTKNWKELLTDEPFTRNDLITIQNPNALDDRVLLDFDHVKNDLKVDDEELQKMSSDPTYNINMSGDIKQMLQELGTDKGKETAMHGGGGGKAQKERAAALAAIIAARSRVDEDSKSNANKDAKAPQAFSIVDAASAAVHGRSAAAAKASSGDKTAARIAMHMSGDRAPVNAKMVKSRFTTGAASRSFTSTSFDPVTKNEFEYVKVEKNPKKKGYVQLHTTHGDLNIELHCDITPRTCENFITLCERGFYNGVAFHRSIRNFMIQGGDPTGTGRGGESIWGKPFKDELNSKLVHSGRGVVSMANSGPHTNGSQFFILYKSANHLNFKHTVFGVVVGGLTTLAAMEKVPVDDNDRPLEEIKITSVTIFVNPYTEPDEGEEHDNATEKNVEDEDNGKVGSWFSNPGAGTSESGSTGVGGGVGKYLKARNAQATSANLDTSTAVVGKKRKVGVASSDFKDFSACSVPCFLGALSIRSTFACLQGT 617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2313g00003 617 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 350 500 IPR002130 GO:0000413|GO:0003755
Vium2313g00003 617 CDD cyclophilin_RING 350 508 - -
Vium2313g00003 617 FunFam Peptidyl-prolyl cis-trans isomerase 2 41 96 - -
Vium2313g00003 617 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 354 501 IPR002130 GO:0000413|GO:0003755
Vium2313g00003 617 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 385 402 IPR020892 GO:0003755|GO:0006457
Vium2313g00003 617 MobiDBLite consensus disorder prediction 535 549 - -
Vium2313g00003 617 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 40 96 IPR013083 -
Vium2313g00003 617 MobiDBLite consensus disorder prediction 506 551 - -
Vium2313g00003 617 SUPERFAMILY RING/U-box 37 105 - -
Vium2313g00003 617 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 461 476 IPR002130 GO:0000413|GO:0003755
Vium2313g00003 617 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 448 460 IPR002130 GO:0000413|GO:0003755
Vium2313g00003 617 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 390 402 IPR002130 GO:0000413|GO:0003755
Vium2313g00003 617 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 433 448 IPR002130 GO:0000413|GO:0003755
Vium2313g00003 617 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 364 379 IPR002130 GO:0000413|GO:0003755
Vium2313g00003 617 ProSiteProfiles U-box domain profile. 35 108 IPR003613 GO:0004842|GO:0016567
Vium2313g00003 617 MobiDBLite consensus disorder prediction 508 528 - -
Vium2313g00003 617 SMART Ubox_2 39 101 IPR003613 GO:0004842|GO:0016567
Vium2313g00003 617 CDD RING-Ubox_PPIL2 38 110 IPR026951 -
Vium2313g00003 617 SUPERFAMILY Cyclophilin-like 350 509 IPR029000 -
Vium2313g00003 617 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED 344 514 IPR044666 -
Vium2313g00003 617 Gene3D - 332 514 IPR029000 -
Vium2313g00003 617 FunFam Peptidyl-prolyl cis-trans isomerase cyp65 331 515 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2313g00003 Vium-Chr2313 36539 45653 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2313g00003 1 595 U-box Gene Family AT5G67530 75.707 0.0 909
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2313g00003 K10598 - gmx:100819923 1053.12