Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2313g00002 ATGGATACCACGTTGTTTGGTGTAGTGAGATTCCAACATCAACTCCAACCTCCTCAAGGTGATCAAGATCAATCACTCAACAACTCCACCACCACCACCAGCTCTCCATCCTCCAGACAACACAACTATCCCTACCCACAAGAAGACGAAGAATGCTTCAACTTTTTCATGGATGAAGAAGACCTATCCTCGTCTTCTTCCAAGCACTACTATCCCTATCAACCCCACCCTTCCTCCACTACACCTACCACCACCACCACCGACCTCTCCTTCTCTCCCACCCGAGACGCCGCCTTCCCTTTCCAGCTCTCCGGCAAGTGGGCCAACGACATCCTCCTCGAAACCGCACGTGCCGTCTCCGACAAGAACACCACGCGCCTCCAGCAACTCATGTGGATGCTCAACGAACTCGCCTCCCCCTACGGCGACACCGACCAGAAACTCGCCTCCTACTTCCTCCAAGCCTTCTTCAGCCGCATCACCCAAGCCGGGGACCGAACCTATCGAACCTTGGCCTCGGCCTCCGAGAGAACATGCTCCTTCGAATCCACGCGCAAGACCGTGCTGAAGTTCCAAGAGGTCAGTCCCTGGACAACCTTCGGACACGTGGCGTCCAATGGTGCCATCTTGGAAGCCTTGGAAGGCGAGCCCAAACTACACATAGTTGACATCAGCAACACCTATTGCACCCAATGGCCTACGCTCTTCGAAGCCCTTGCCACTCGAAACGACGACACTCCGCACCTCCGTCTCACCTCCCTCGTCACCGCCGCCTCCGCGCACAAGGTCATGAAGGAAATCGGCACCAGAATGGAGAAATTTGCCAGACTCATGGGCGTGCCCTTTCAATTCAACGTCGTTCAGCACTTAGGTCAACTTTCTGACTTCGATTTCGGCGCCTTGGATATCAAAGAGGACGAGGCTTTGGCTATTAACTGTGTCAATACTTTGCATTCGGTCTCCGCCATCGGGAACCACCGCGAAGCAGTGATATCCTCGCTGAGGAGGCTGCAGCCGAGGATCGTGACGGTGGTGGAGGAGGAGGCGGACTTGGACGTGGGATTGGAGGGGTTGGAGTTCGTGAAGGGTTTTGAAGAGTGTTTGAGGTGGTTTAGGGTTTACTTCGAAGCGTTAGAAGAGAGCTTTCCGAAGACGAGCAACGAGCGGTTGATGCTGGAGCGGGCGGCGGGGAGGGAGGTGGTCGACCTGGTGGCGTGTTCGGCTTCGGATTCGGTGGAGCGACGGGAGAGGGCGGGGCGGTGGACGAGGAGGATGCATGGAGGTGGATTCAATACGGTGGCGTTTAGCGAAGAGGTGTGTGATGACGTGAGAGCGTTGTTGAGGAGGTATAGGGAGGGATGGTCAATGGCACAGTGCTCCGACGCCGGAATATACCTTTCGTGGAAGGACCAGCCGGTGGTGTGGGCCAGTGCATGGAGGGCCTTGACGTAG 1452 0.562 MDTTLFGVVRFQHQLQPPQGDQDQSLNNSTTTTSSPSSRQHNYPYPQEDEECFNFFMDEEDLSSSSSKHYYPYQPHPSSTTPTTTTTDLSFSPTRDAAFPFQLSGKWANDILLETARAVSDKNTTRLQQLMWMLNELASPYGDTDQKLASYFLQAFFSRITQAGDRTYRTLASASERTCSFESTRKTVLKFQEVSPWTTFGHVASNGAILEALEGEPKLHIVDISNTYCTQWPTLFEALATRNDDTPHLRLTSLVTAASAHKVMKEIGTRMEKFARLMGVPFQFNVVQHLGQLSDFDFGALDIKEDEALAINCVNTLHSVSAIGNHREAVISSLRRLQPRIVTVVEEEADLDVGLEGLEFVKGFEECLRWFRVYFEALEESFPKTSNERLMLERAAGREVVDLVACSASDSVERRERAGRWTRRMHGGGFNTVAFSEEVCDDVRALLRRYREGWSMAQCSDAGIYLSWKDQPVVWASAWRALT 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2313g00002 483 MobiDBLite consensus disorder prediction 15 43 - -
Vium2313g00002 483 MobiDBLite consensus disorder prediction 66 89 - -
Vium2313g00002 483 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 108 473 IPR005202 -
Vium2313g00002 483 ProSiteProfiles GRAS family profile. 99 480 IPR005202 -
Vium2313g00002 483 MobiDBLite consensus disorder prediction 13 45 - -
Vium2313g00002 483 Pfam GRAS domain family 110 480 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2313g00002 Vium-Chr2313 29800 31790 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2313g00002 41 480 GRAS Transcription Factor Family AT4G37650 61.212 0.0 584
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vium2313g00002 GRAS 3.6e-106 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2313g00002 - - gmx:100820459 763.837