Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vium2311g00001 | ATGACCAACTTTTCGATTCTCCTTCTCCTTGTTCTCTGCACCCTCCACAGTTGCTTCGCCGCCTCCAACCCCTCCAACTTCATAAAATCCTCCTGCAGCACCACCCAGTACCCCGCCCTCTGCGTGGAGTCGCTATCGGTGTACGCCGCCGCCATCCAGCAGGACCCTCACCAGCTCGTCCAGACGGCTCTCTCCCTGGCCCTCAACCGAACCGAGTCTACCAAAACCTTCGTGTCCAAATGTAACAAGTTCAGGGGTCTCAAGCCACGGGAGTACGCCGCCCTCAAAGACTGCGCGGAGGAAATCAGCGACAGCGTCGATCGGCTGTCACGGTCGCTGAAGGAGCTGAAGCTCTGCAAGGTTAACGGACAGGACTTCGCCTGGCACATCAGCAACGTGGAGACGTGGGTGAGCTCTGCGCTCACCGACGAGAGTACTTGCGGCGACGGCTTCGCCGGAAAGGCGCTCAGCGGCAAGATCAAGGACTCCATCAGGGGCAGAATGGTGAATGTTGCTCAGGTCACCAGCAATGCCCTCTCTCTCATCAACCAGTATGCTGCCAAACACTAA | 570 | 0.5807 | MTNFSILLLLVLCTLHSCFAASNPSNFIKSSCSTTQYPALCVESLSVYAAAIQQDPHQLVQTALSLALNRTESTKTFVSKCNKFRGLKPREYAALKDCAEEISDSVDRLSRSLKELKLCKVNGQDFAWHISNVETWVSSALTDESTCGDGFAGKALSGKIKDSIRGRMVNVAQVTSNALSLINQYAAKH | 189 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vium2311g00001 | 189 | SMART | PMEI_2 | 23 | 181 | IPR006501 | GO:0004857 | |
| Vium2311g00001 | 189 | NCBIfam | pectinesterase inhibitor domain | 5 | 185 | IPR006501 | GO:0004857 | |
| Vium2311g00001 | 189 | Gene3D | Invertase/pectin methylesterase inhibitor family protein | 23 | 185 | IPR035513 | - | |
| Vium2311g00001 | 189 | PANTHER | PECTINESTERASE INHIBITOR-LIKE | 7 | 181 | - | - | |
| Vium2311g00001 | 189 | FunFam | Pectin methylesterase inhibitor 1 | 23 | 185 | - | - | |
| Vium2311g00001 | 189 | SUPERFAMILY | Plant invertase/pectin methylesterase inhibitor | 25 | 185 | IPR035513 | - | |
| Vium2311g00001 | 189 | CDD | PMEI-like_3 | 30 | 187 | - | - | |
| Vium2311g00001 | 189 | Pfam | Plant invertase/pectin methylesterase inhibitor | 26 | 181 | IPR006501 | GO:0004857 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vium2311g00001 | Vium-Chr2311 | 24364 | 25147 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vium2311g00001 | 28 | 182 | Carbohydrate Esterase | AT3G14310 | 29.487 | 6.59e-20 | 84.7 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vium2311g00001 | - | - | gmx:100305900 | 315.464 |