Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2308g00003 ATGGATGAAATTGAAATTCCTGCTCATTTTCTTTGCCCCATTTCCCTCCAACTCATGAGGGACCCTGTAACTGTTTGCACAGGAATCACTTATGACAGAGAGAACATAGAGAAGTGGTTGTTTTCATGCAAGAACAACACATGCCCCGTTACCAAGCAGTGCCCATTGGATCATGATCTCACCCCAAACCACACTCTACGCAGGTTGATCCAATCTTGGTGCACCCTCAATGCCTCATTTGGAGTTGAACGCATTCCAACTCCAAAGTCACCAATCGACAGAACTCAGATTGTGAAACTCCTCGTAGAAGCAAAGAAGTTCCCCGAGAAGCAACTCAAATGCCTCACAAGACTTCGATCCATTGCCTTTGAGGGTCAAAGGAACAAGGCCTGTTTAGAGTCTGCAGGAGTTGTTGAATTCTTGGCCTCAACCATGAAGCACAAGACAGAAGAAAACTCAACTGTTCTCTGTGAAGCAGCTATCGAAGTCTTATTCCACCTTAGCCCTTCTGAGGCTCAGCTTAAAGCTCTCTTATATAACGAGGGGTTTCAGTTTATTGAATCATTGTTCCACGCGTTGAGGCTTGGAAACTACCAATCGAGAGCTTATGCAACCATGCTGCTTAGATCAGCATTGGAGGTGGCTGATCCCATCCAACTGATCAGTGTCAAAACAGTGCTGTTTGTGGAAATCTTGCGCGTGCTGCGTGATCAGATTTCGCAACAGGCTTCAAAGGCTGCATTGAAGCTGATCGTGGAGCTCTTTCCGTGGGGCAGAAACAGGATCAAAGGGGTTGAGGGTGGTGCAGTTTCGGTCCTGATTGAGCTACTTCTTTGTACCTCGGAAAGAAGAACCTGTGAACTGATTTTAATAGCTTTGGATCAACTTTGTGGGTGTGCAGAAGGGCGTGCAGAGTTGTTGAACCATGGTGCAGGAGTGGCCATTGTGTCCAAGAAAATTCTAAGGGTCTCTCTCGTGGCAAGCGATAGAGGGGTTAGAATTTTGGCCTCCATTTGTAGGTATTCCGCCAATGCTAGGGTGCTCCATGAAATGTTGCAGGTTGGGGCTGTGTCAAAGTTGTGTTTGGTGCTTCAAGTGAATTGCAATTTCAAGACCAAAGAGAGAGCCAAGGAGATACTCAGATTGCATTCCTCAGTTTGGAAGAATTCTCCATGTATTCCTGTTCCTTTGTTATCTTCTTTTCCTTGA 1209 0.4591 MDEIEIPAHFLCPISLQLMRDPVTVCTGITYDRENIEKWLFSCKNNTCPVTKQCPLDHDLTPNHTLRRLIQSWCTLNASFGVERIPTPKSPIDRTQIVKLLVEAKKFPEKQLKCLTRLRSIAFEGQRNKACLESAGVVEFLASTMKHKTEENSTVLCEAAIEVLFHLSPSEAQLKALLYNEGFQFIESLFHALRLGNYQSRAYATMLLRSALEVADPIQLISVKTVLFVEILRVLRDQISQQASKAALKLIVELFPWGRNRIKGVEGGAVSVLIELLLCTSERRTCELILIALDQLCGCAEGRAELLNHGAGVAIVSKKILRVSLVASDRGVRILASICRYSANARVLHEMLQVGAVSKLCLVLQVNCNFKTKERAKEILRLHSSVWKNSPCIPVPLLSSFP 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2308g00003 402 SUPERFAMILY ARM repeat 107 387 IPR016024 -
Vium2308g00003 402 Gene3D - 81 391 IPR011989 -
Vium2308g00003 402 SMART Ubox_2 9 73 IPR003613 GO:0004842|GO:0016567
Vium2308g00003 402 Pfam U-box domain 6 75 IPR003613 GO:0004842|GO:0016567
Vium2308g00003 402 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 80 IPR013083 -
Vium2308g00003 402 PANTHER WDSAM1 PROTEIN 3 394 IPR045185 GO:0061630
Vium2308g00003 402 CDD RING-Ubox_PUB 7 59 IPR045210 -
Vium2308g00003 402 FunFam RING-type E3 ubiquitin transferase 1 83 - -
Vium2308g00003 402 SUPERFAMILY RING/U-box 3 77 - -
Vium2308g00003 402 ProSiteProfiles U-box domain profile. 5 80 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2308g00003 Vium-Chr2308 31367 33469 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2308g00003 2 402 U-box Gene Family AT2G35930 56.296 5.70e-163 462
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2308g00003 - - gmx:100778012 718.383