Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2308g00002 ATGACAGAAATTGAAATTCCTCAGTTTTTTGCTTGTCCCATTTCGCTTCAGATCATGAAGGACCCTGTGACAACCGTTACGGGCATAACCTACGACAGAGAAAGCATAGATTACTGGTTGTTGAAAGCCAAAGATTGCACGTGTCCAATCACAAAGCAACCATTGCCGCGAAACGCAGAGTTCTTAACCCCAAACCACACGCTTCGGAGGCTAATCCAAGCTTGGTGTTTAGCGAATGAAGCAAACGGTGTTGATCAGATTCCGACACCGAAATCCCCTCCTAGCAATGCCGACGTTGAGAAGCTCGTGAAGGATCTCGAAGTTCCTCCACGCTTTCAAAACGCAATGGAGAAGTTGCATAACCTTGCAGTAGAGAACGAGAGAAACAGGAGGTGTATGGCTTCAGTGGGTGTTGCAGAAGCTATGGTGCACGTGATCACAAAGAGTTTCAAGCAGGGAAAAACGACGTCGTGCGTTGAGGAGGCTCTGAGGATTCTTCGTTTGCTTTGGAGCAGTGCCAATGTGGTGGACAGTAACCACATGAAGCGCTTGGTACGTCATAACTTTGACTTTCTGAACTCCTTGACGTGGGTTTTGCAGCTTCAAACTAAGAACAACATCAAGGTAATTAACGAAGCATTACCTTTATTGAAATTGACAATTGAAGCTAAAGATTCAACCCCTTTAGGGAACTTAGGGCTTGAATTCTTCAGAGTGTTTGTGAATGTGATGAAAAATAGAGAACTCTCTCAGCAAGCTATTAAATCTGCACTGCATGTGCTCATAGAAACCTGTCCTTTGGGGAGAAATAGAACGAAGATAGTTGAAGCAGGTGCGGTGCAGGATCTGGTTGAACTTGCCCTTGAAAAACCAGAAAAGAATCTAACAGAACTGGTATTCATCCTTTTGGCGCATCTGTGTTCTTGTGCTGATGGGAGAGACCAGTTTCTGCAGCATGCTGCAGGCATTGCTGTGGTTTCAAAAAGGATCCTTAGGGTTTCTCCAACCACCGATGATCGAGCTCTTCATATATTTTCCTTGATTTCAAAGTTTTCAGCGTCTAATGAAGTCGTGCAAGAGATGCTGAGGGTTGGTGCTGTGTCAAAGCTTTGCATGGTGCTGCAAGCAGCTTGTGCTTCCCATTTGAAAGAAAAGGCAAGAGGTGTACTTAGGCTACACTCCAAAACATGGAACAATTCTCCCTGTATTCAAGTATATTTGTTAACCAGATTCCAAAGGTGA 1242 0.4444 MTEIEIPQFFACPISLQIMKDPVTTVTGITYDRESIDYWLLKAKDCTCPITKQPLPRNAEFLTPNHTLRRLIQAWCLANEANGVDQIPTPKSPPSNADVEKLVKDLEVPPRFQNAMEKLHNLAVENERNRRCMASVGVAEAMVHVITKSFKQGKTTSCVEEALRILRLLWSSANVVDSNHMKRLVRHNFDFLNSLTWVLQLQTKNNIKVINEALPLLKLTIEAKDSTPLGNLGLEFFRVFVNVMKNRELSQQAIKSALHVLIETCPLGRNRTKIVEAGAVQDLVELALEKPEKNLTELVFILLAHLCSCADGRDQFLQHAAGIAVVSKRILRVSPTTDDRALHIFSLISKFSASNEVVQEMLRVGAVSKLCMVLQAACASHLKEKARGVLRLHSKTWNNSPCIQVYLLTRFQR 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2308g00002 413 SUPERFAMILY ARM repeat 231 377 IPR016024 -
Vium2308g00002 413 SMART Ubox_2 9 75 IPR003613 GO:0004842|GO:0016567
Vium2308g00002 413 Gene3D - 113 403 IPR011989 -
Vium2308g00002 413 CDD RING-Ubox_PUB 7 55 IPR045210 -
Vium2308g00002 413 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 86 IPR013083 -
Vium2308g00002 413 SUPERFAMILY RING/U-box 3 84 - -
Vium2308g00002 413 ProSiteProfiles U-box domain profile. 5 82 IPR003613 GO:0004842|GO:0016567
Vium2308g00002 413 Pfam U-box domain 6 80 IPR003613 GO:0004842|GO:0016567
Vium2308g00002 413 PANTHER WDSAM1 PROTEIN 3 404 IPR045185 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2308g00002 Vium-Chr2308 17464 19094 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2308g00002 3 403 U-box Gene Family AT2G35930 41.481 1.05e-103 311
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2308g00002 - - gmx:100778547 719.924