Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2306g00005 ATGAATCACCTACCTCGACTATTCGGCAATAGAAAGAAGCCTCCAAACATGGACCCCAAGAAGAGCAAGACGCGAGGCAAGAAGCAGCAGCCCAAGCTCGAGCGCCGCAACGCCGCCAAGCACTTCGAATACGACGCCGGATCGTCGTCTTCTTTGCGAGGTGACTCCGCATCCGTCTCCACGTCGTCTTCCTCGTCGTCTTCGTTATTTACGCGTTCAATGGACTTCTACGGCCACCGGAGCTTCCGAATCGATGGCGTGGAGGGCGAGTTCGACCGGATTTGTCAAAGCCTCGGCCTCTCCGGTCCGGAGGACTTCTCCATTCCGACCGCCGCCTGGGAGGCCATGAAGCTCCGCTCCTCCTCCGACATCCCGTTGCTCCGGAACCACGACGGGAAGGCGTTGGACGAGGAGGCGAAGGAGAAGGAGGAAATTGAAGCGGTTGAGAGCGAGTATGAGGCTAGGGTTTTGGATGAGTGTGTTGTTCCTGCTGAGAGCAGTGGTTGCTGCACCGCTGGCGGCGGAGGAATTAAGGGTTTTCGGCCTCCGATGCTGAAGCCGCCGCCAGGGATTAGGGTTTCGGTGGTGGACGAGACGTGTTCGACATGGGATTTGTTGCGGGATTTTGCGCCGAAAGGGGAGGGAGGGAAGGAGACTTACGTGGAGTTGAGTGCTTCTGATGAAGATGAGGACGGAGAAGTAAAGGAAGAGGAGGATGAGGAAGAAGGGGAAGTTGGTGGAGTGAGGGTGGAGAGAGAAGAGGAGGAAAACGCGGCGAGGATTGCGGATATTGTGGATGAGTTTTCTGGGTTTTCTACTTCGAACGAAGATGATTCTTCTAGCACTACCACGGGTCCTAATTCTAGTAATATATCTCCTAATGGGAGAATCAAGCGTGTGATTACCGCAGGTAACTGGCAGAAGGGTGAGCTTTTGGGGCGTGGTTCGTTTGGCTATGTCTATGAAGGGATTTCTGAAGATGGATTCTTTTTTGCTGTAAAACAAGTTTCACTACTTGATCAGGGGAATCAGGGAAGGCAAAGTGTATATCAACTGGAACAGGAAATTGCACTTTTGAGTCAATTTGAACACGAGAATATAGTTCAATACTTTGGCACTGAAATGGATGCGTCAAATCTGTATATCTTTATTGAGCTTGTAACTAAAGGATCCCTTAGAAATCTCTACCAGACATATACTCTTCGAGATTCTCAAGTATCTGCTTATACAAGGCAGATTTTGCATGGTTTAAAGTATCTCCATGATCGAAACATCGTTCACAGGGATATTAAATGTGCAAATATATTGGTGGATGCGAATGGATCTGTTAAGCTTTCAGATTTTGGATTGGCGAAGGCAATCAAATTGAATGATGTTAAATCATGCAAGGGAACAGCATTCTGGATGGCCCCAGAGGTTGTGAAAGGTAAACAAAAAGGTTACGGGCTTCCAGCTGATATATGGAGTCTTGGATGTACTGTGTTAGAGATGTTAACTGGCCAATTTCCATACTCTCACTTAGAATGTATGCAGGCATTGTTTAGAATTGGAAGAGGCGAGCCCCCTATTGTGCCTGATTCCCTTTCAAGAGATGCACAAGATTTTATCCTGCAGTGTCTCAAAGTTAATCCAGATGAACGTCCCAGTGCTGCTAAACTCCTAAACCATACCTTTGTCCAAAGGCCGCTACTTTCCCAGACCTCTGGTTCTGCATCTCCTTATATTCGAAGGGGTTAA 1737 0.4842 MNHLPRLFGNRKKPPNMDPKKSKTRGKKQQPKLERRNAAKHFEYDAGSSSSLRGDSASVSTSSSSSSSLFTRSMDFYGHRSFRIDGVEGEFDRICQSLGLSGPEDFSIPTAAWEAMKLRSSSDIPLLRNHDGKALDEEAKEKEEIEAVESEYEARVLDECVVPAESSGCCTAGGGGIKGFRPPMLKPPPGIRVSVVDETCSTWDLLRDFAPKGEGGKETYVELSASDEDEDGEVKEEEDEEEGEVGGVRVEREEEENAARIADIVDEFSGFSTSNEDDSSSTTTGPNSSNISPNGRIKRVITAGNWQKGELLGRGSFGYVYEGISEDGFFFAVKQVSLLDQGNQGRQSVYQLEQEIALLSQFEHENIVQYFGTEMDASNLYIFIELVTKGSLRNLYQTYTLRDSQVSAYTRQILHGLKYLHDRNIVHRDIKCANILVDANGSVKLSDFGLAKAIKLNDVKSCKGTAFWMAPEVVKGKQKGYGLPADIWSLGCTVLEMLTGQFPYSHLECMQALFRIGRGEPPIVPDSLSRDAQDFILQCLKVNPDERPSAAKLLNHTFVQRPLLSQTSGSASPYIRRG 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2306g00005 578 MobiDBLite consensus disorder prediction 224 244 - -
Vium2306g00005 578 Coils Coil 135 155 - -
Vium2306g00005 578 FunFam Mitogen-activated protein kinase 1, putative, expressed 304 572 - -
Vium2306g00005 578 ProSitePatterns Serine/Threonine protein kinases active-site signature. 425 437 IPR008271 GO:0004672|GO:0006468
Vium2306g00005 578 SUPERFAMILY Protein kinase-like (PK-like) 289 565 IPR011009 -
Vium2306g00005 578 ProSiteProfiles Protein kinase domain profile. 306 559 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2306g00005 578 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 22 573 - -
Vium2306g00005 578 MobiDBLite consensus disorder prediction 49 69 - -
Vium2306g00005 578 MobiDBLite consensus disorder prediction 245 262 - -
Vium2306g00005 578 SMART serkin_6 306 559 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2306g00005 578 MobiDBLite consensus disorder prediction 1 69 - -
Vium2306g00005 578 MobiDBLite consensus disorder prediction 222 295 - -
Vium2306g00005 578 Pfam Protein kinase domain 307 559 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2306g00005 578 MobiDBLite consensus disorder prediction 268 295 - -
Vium2306g00005 578 ProSitePatterns Protein kinases ATP-binding region signature. 312 334 IPR017441 GO:0005524
Vium2306g00005 578 Gene3D Transferase(Phosphotransferase) domain 1 303 574 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2306g00005 Vium-Chr2306 16884 28701 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2306g00005 32 563 MAP Kinase Kinase Kinase AT4G08500 52.381 3.29e-172 500
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Vium2306g00005 Pkinase 1.9e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2306g00005 K13414 - gmx:100804388 838.565