Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2306g00003 ATGAATCACCTACCTCGACTATTCGGCAATAGAAAGAAGCCTCCAAACATGGACCCCAAGAAGAGCAAGACGCGAGGCAAGAAGCAGCAGCCCAAGCTCGAGCGCCGCAACGCCGCCAAGCACTTCGAATACGACGCCGGATCGTCGTCTTCTTTGCGAGGTGACTCCGCATCCGTCTCCACGTCGTCTTCCTCGTCGTCTTCGTTATTTACGCGTTCAATGGACTTCTACGGCCACCGGAGCTTCCGAATCGATGGCGTGGAGGGCGAGTTCGACCGGATTTGTCAAAGCCTCGGCCTCTCCGGTCCGGAGGACTTCTCCATTCCGACCGCCGCCTGGGAGGCCATGAAGCTCCGCTCCTCCTCCGACATCCCGTTGCTCCGGAACCACGACGGGAAGGCGTTGGACGAGGAGGCGAAGGAGAAGGAGGAAATTGAAGCGGTTGAGAGCGAGTATGAGGCTAGGGTTTTGGATGAGTGTGTTGTTCCTGCTGAGAGCAGTGGTTGCTGCACCGCTGGCGGCGGAGGAATTAAGGGTTTTCGGCCTCCGATGCTGAAGCCGCCGCCAGGGATTAGGGTTTCGGTGGTGGACGAGACGTGTTCGACATGGGATTTGTTGCGGGATTTTGCGCCGAAAGGGGAGGGAGGGAAGGAGACTTACGTGGAGTTGAGTGCTTCTGATGAAGATGAGGACGGAGAAGTAAAGGAAGAGGAGGATGAGGAAGAAGGGGAAGTTGGTGGAGTGAGGGTGGAGAGAGAAGAGGAGGAAAACGCGGCGAGGATTGCGGATATTGTGGATGAGTTTTCTGGGTTTTCTACTTCGAACGAAGATGATTCTTCTAGCACTACCACGGGTCCTAATTCTAGTAATATATCTCCTAATGGGAGAATCAAGCGTGTGATTACCGCAGGTAACTGGCAGAAGGGTGAGCTTTTGGGGCGTGGTTCGTTTGGCTATGTCTATGAAGGGATTTCTGAAGATGGATTCTTTTTTGCTGTAAAACAAGTTTCACTACTTGATCAGGGGAATCAGGGAAGGCAAAGTGTATATCAACTGGAACAGGAAATTGCACTTTTGAGTCAATTTGAACACGAGAATATAGTTCAATACTTTGGCACTGAAATGGATGCGTCAAATCTGTATATCTTTATTGAGCTTGTAACTAAAGGATCCCTTAGAAATCTCTACCAGACATATACTCTTCGAGATTCTCAAGTATCTGCTTATACAAGGCAGATTTTGCATGGTTTAAAGTATCTCCATGATCGAAACATCGTTCACAGGGATATTAAATGTGCAAATATATTGGTGGATGCGAATGGATCTGTTAAGCTTTCAGATTTTGGATTGGCGAAGGCAATCAAATTGAATGATGTTAAATCATGCAAGGGAACAGCATTCTGGATGGCCCCAGAGCCATGGACCTGA 1428 0.4958 MNHLPRLFGNRKKPPNMDPKKSKTRGKKQQPKLERRNAAKHFEYDAGSSSSLRGDSASVSTSSSSSSSLFTRSMDFYGHRSFRIDGVEGEFDRICQSLGLSGPEDFSIPTAAWEAMKLRSSSDIPLLRNHDGKALDEEAKEKEEIEAVESEYEARVLDECVVPAESSGCCTAGGGGIKGFRPPMLKPPPGIRVSVVDETCSTWDLLRDFAPKGEGGKETYVELSASDEDEDGEVKEEEDEEEGEVGGVRVEREEEENAARIADIVDEFSGFSTSNEDDSSSTTTGPNSSNISPNGRIKRVITAGNWQKGELLGRGSFGYVYEGISEDGFFFAVKQVSLLDQGNQGRQSVYQLEQEIALLSQFEHENIVQYFGTEMDASNLYIFIELVTKGSLRNLYQTYTLRDSQVSAYTRQILHGLKYLHDRNIVHRDIKCANILVDANGSVKLSDFGLAKAIKLNDVKSCKGTAFWMAPEPWT 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2306g00003 475 MobiDBLite consensus disorder prediction 224 244 - -
Vium2306g00003 475 Coils Coil 135 155 - -
Vium2306g00003 475 SUPERFAMILY Protein kinase-like (PK-like) 303 472 IPR011009 -
Vium2306g00003 475 ProSitePatterns Serine/Threonine protein kinases active-site signature. 425 437 IPR008271 GO:0004672|GO:0006468
Vium2306g00003 475 SMART serkin_6 306 475 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2306g00003 475 ProSiteProfiles Protein kinase domain profile. 306 475 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2306g00003 475 MobiDBLite consensus disorder prediction 49 69 - -
Vium2306g00003 475 MobiDBLite consensus disorder prediction 245 262 - -
Vium2306g00003 475 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 21 472 - -
Vium2306g00003 475 MobiDBLite consensus disorder prediction 1 69 - -
Vium2306g00003 475 MobiDBLite consensus disorder prediction 222 295 - -
Vium2306g00003 475 MobiDBLite consensus disorder prediction 268 295 - -
Vium2306g00003 475 Gene3D Transferase(Phosphotransferase) domain 1 303 475 - -
Vium2306g00003 475 ProSitePatterns Protein kinases ATP-binding region signature. 312 334 IPR017441 GO:0005524
Vium2306g00003 475 Pfam Protein kinase domain 307 472 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2306g00003 Vium-Chr2306 16881 22330 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2306g00003 32 472 MAP Kinase Kinase Kinase AT4G08500 48.589 1.30e-121 366
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Vium2306g00003 Pkinase 2.2e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2306g00003 K13414 - gmx:100804388 642.114