Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2304g00012 ATGGAGGCTCATTTTGTGGCTCCCTTTCCATTGATGTTTCTGATCACTCTTTGGCTTTTACTGGCTCATCATGCCAAAGCTGAAAGTTCCACATATGTAGTTCACATGGACAAGTCGCTCATGCCTCAACTCTTTGCAAGCCATCATGATTGGTATGAATCCATCATCCATTCCATAGACTTGGCAATAGCTGATGATCCATCAAAGCAACAAGAGCTGAAACTAGTGTACACTTATGATAATGCCATGCATGGATTCAGTGCAGTGTTATCATCAGAGGAGTTGGAGAGCCTAAAGAAAGTTGATGGCTTTGTGACAGCTTATCCTGACAGGTCTGCCACCGTAGACACCACACACACCTTTGAGTTTCTGTCATTGGACACCCCCGGAGGAATATGGAATGCTTCAAATTTTGGGGAGGGTGTCATTGTGGGTCTCATAGACACTGGAATATGGCCTGAAAGTGCCAGTTTCAAAGATGATGGCATGACCAGAAATATCCCATCCAAATGGAAAGGAACATGCGAGCCAGGACAAGACTTTGATGCCTCCATCTGTAACTTCAAATTGATTGGAGCCAGGTACTTCAACAAGGGTGTGAAAGCAGCGAATCCAAATGTCACAATCAGCATGAACTCAGCGAGAGACACTCAGGGTCATGGAAGCCACACATCATCTACTGTTGCTGGCAATTATGTGAATGGTGCCTCTTTCTTTGGCTACGCCAAAGGGGTAGCCAGAGGCGTTGCACCTCGAGCTAGGCTTGCCATGTATAAGGTCCTTTGGGATGAAGGGCGTCAAGCCTCTGATGTTCTTGCAGGAATGGACCAAGCCATTGCTGATGGGGTTGATGTCATTTCCATTTCTTTGGGTTTTGACAGTGTTCCGCTTTATGAGGATCCTGTGGCAATAGCTGCTTTTGCAGCAATGGAAAAGGGGGTTCTGGTTTCATCTTCAGCTGGCAATGAAGGTCCTGATATTGGTACTTTGCATAATGGAATCCCTTGGGTCCTAACAGTTGCAGCAGGCACCATAGACCGAACTTTTGGCAGTTTGGCTCTTGGCAATGGCCAAACCATTGTGGGTTGGACCTTGTTTGCAGCAAACTCCATAGTGGAGAATTTTCCACTTATTTACAACAAGAATCTATCGGCGTGCAACTCGGTTAAACTGTTATCCGAAGCAGCCACAAGAGGGATCATTATATGTGATGCCTTTGACTCAATTTCTGTCCTTGAGCAAATAGATCTTGTTACTGCAGCCAGTGTGGTAGGAGCTGTGTTTATCTGCGAGGATCCACGGCTACTTGAAACAGGACGTTTGTCTTCTCCAAGCATTGTGATCAGCCCAAGTGATGCACCATCCGTGATCAAGTACGCAAAAAGTGTTGAGAATCCCTTTGCCAGCATCAACTTTCAACAAACGTTTGTTGGAATAAAGCCAGCACCAGCTGCTGCATATTACACTTCAAGAGGTCCTTCACCAAGCTACCCGGGGATCTTAAAGCCTGATGTAATGGCACCTGGCTCAAATGTTCTGGCTGCTTTTGTTCCAAATAAAGCTTCAGCTAGAATTGGCACAAATGTGCTTCTCTCTAGCGACTACAATTTTTTGTCCGGAACATCCATGGCATGTCCTCATGCATCTGGTGTTGCTGCTCTTCTAAAAGCAGCACACCCTGATTGGAGTGCAGCTGCTATAAGATCTGCACTGGTCACCACTGCCAACCCTTTTGACAACACTCAAAGTCCAATTAGGGATAATGGTAACCCATTGCAATATGCTTCTCCTCTTGCCATGGGAGCTGGTGAGATTGATCCTAACAAAGCACTTGATCCAGGTTTCATATATGATGCCACCCCTCAGGACTATGTTAACCTCCTTTGCGCTTTGGGCTACACACAGAACCAGATCCTAACTATCACAAGATCAATTATTTACATATGTGCCGATAACCCATCATCTGATCTTAACTACCCTTCTTTTATAGTCTTGTACAGTAACAAAACAAGATCAACAGTCCAAACGTTCAGGAGGACCGTGACCAATGTTGGAGATGGTGCTGCTACGTATAGAGTGAAGGTGAAACAACCTAAGGGCGCTGTTGTTAAGGTTTCTCCAGAGACATTGTCATTTGGCTATAAGAATGAAAAGCAAAACTACTCAGTTACCATAAAGTACAGGAGAAATAAGACGGAAAATATCCCATTTGGGGACATTGTTTGGGTTGAAGATGGTGGTGCACGCAAGGTGAGAAGCCCCATTGTTGTGGCACCTAGTGAAATTGCTTAA 2292 0.4511 MEAHFVAPFPLMFLITLWLLLAHHAKAESSTYVVHMDKSLMPQLFASHHDWYESIIHSIDLAIADDPSKQQELKLVYTYDNAMHGFSAVLSSEELESLKKVDGFVTAYPDRSATVDTTHTFEFLSLDTPGGIWNASNFGEGVIVGLIDTGIWPESASFKDDGMTRNIPSKWKGTCEPGQDFDASICNFKLIGARYFNKGVKAANPNVTISMNSARDTQGHGSHTSSTVAGNYVNGASFFGYAKGVARGVAPRARLAMYKVLWDEGRQASDVLAGMDQAIADGVDVISISLGFDSVPLYEDPVAIAAFAAMEKGVLVSSSAGNEGPDIGTLHNGIPWVLTVAAGTIDRTFGSLALGNGQTIVGWTLFAANSIVENFPLIYNKNLSACNSVKLLSEAATRGIIICDAFDSISVLEQIDLVTAASVVGAVFICEDPRLLETGRLSSPSIVISPSDAPSVIKYAKSVENPFASINFQQTFVGIKPAPAAAYYTSRGPSPSYPGILKPDVMAPGSNVLAAFVPNKASARIGTNVLLSSDYNFLSGTSMACPHASGVAALLKAAHPDWSAAAIRSALVTTANPFDNTQSPIRDNGNPLQYASPLAMGAGEIDPNKALDPGFIYDATPQDYVNLLCALGYTQNQILTITRSIIYICADNPSSDLNYPSFIVLYSNKTRSTVQTFRRTVTNVGDGAATYRVKVKQPKGAVVKVSPETLSFGYKNEKQNYSVTIKYRRNKTENIPFGDIVWVEDGGARKVRSPIVVAPSEIA 763
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2304g00012 763 CDD PA_subtilisin_like 354 470 - -
Vium2304g00012 763 Pfam Peptidase inhibitor I9 31 112 IPR010259 -
Vium2304g00012 763 Pfam Subtilase family 139 579 IPR000209 GO:0006508|GO:0008236
Vium2304g00012 763 Gene3D - 346 477 - -
Vium2304g00012 763 Gene3D - 628 759 - -
Vium2304g00012 763 FunFam Subtilisin-like protease SBT1.5 141 353 - -
Vium2304g00012 763 Pfam Fibronectin type-III domain 656 757 IPR041469 -
Vium2304g00012 763 ProSiteProfiles Serine proteases, subtilase domain profile. 120 611 - -
Vium2304g00012 763 PRINTS Subtilisin serine protease family (S8) signature 139 158 IPR015500 -
Vium2304g00012 763 PRINTS Subtilisin serine protease family (S8) signature 539 555 IPR015500 -
Vium2304g00012 763 PRINTS Subtilisin serine protease family (S8) signature 216 229 IPR015500 -
Vium2304g00012 763 SUPERFAMILY Subtilisin-like 116 614 IPR036852 GO:0004252|GO:0006508
Vium2304g00012 763 ProSitePatterns Serine proteases, subtilase family, serine active site. 540 550 IPR023828 -
Vium2304g00012 763 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 32 757 IPR045051 -
Vium2304g00012 763 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 20 115 IPR037045 -
Vium2304g00012 763 FunFam Subtilisin-like protease SBT1.9 21 116 - -
Vium2304g00012 763 CDD Peptidases_S8_3 114 576 IPR034197 -
Vium2304g00012 763 Gene3D Peptidase S8/S53 domain 141 624 IPR036852 GO:0004252|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2304g00012 Vium-Chr2304 95006 97862 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2304g00012 27 762 Subtilisin-like Serine Gene Family AT5G67090 41.987 0.0 539
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2304g00012 - - gmx:100806072 1323.53