Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2304g00008 ATGAAGAAACAAAAATCCGATGATCAAATCTCAGTTGATCCTGAAAATATTAAGGTAAAGGCTTTCACTTTCCGTGAGCTAGCAACAGCGACAAAGAATTTCCGACAGGATTGCCTGTTGGATGAAGGATGTTTCGGGAGAGTATACAAAGGAGTAATTCCTGCCACCGGCCAGGTCGTGGCCGTGAAGCAACTCGATCGAAATGGGATCGGTAAGGAAATTCTGGATGCTGTTTCTGATCTAAGTCTGTTGCAGCATGAGAATCTGGTAAATCTCATTGGTTATTGTGCCGATGGTGATCAACGTCTTTTGGTTTACGAGTTGTTTTCTGGGCGCACTCTTGAAAGCCGTATTTTTGAGAATAAAGAGGATGAAGCACCATTAAACTGGTTTGACAGAATGAAAATACTAGCGGGTGCTTCAAAAGGGCTAGAGTACTTACATGAGAGTTCGGACCCTCCAGTTATATTCAAGGATTTGAAAGCGTCGAGCATCTTGGTGGACAATGATTTCAATGTTAAACTACGTGATGTTGGAATGACCAAGCTTTCTGGAGACAAGATGAACAACGGACCTCCAAGACTTATGGGGAACAATGGTTACTGCGCTCCGGAGTATGTAAGAACAGGTCAAGTCACCAAGAAATCAGACGTCTACAGTTTCGGAGTTATCTTGCTGGAGCTCATTACTGGACGAAGAGCCATTGACACCACCAGACCAAATGAAGAGCAAAATCTAGTTGCATGGGCAACCCCCTTGTTCAGGGACCCGAAGAGATATCCAGACATGGCGGATCCGGTTCTTAAAAAGAATTTCCCAGATAAAGATCTGAATCAAGTTGTTGCAATAGCATCCATGTGCTTACAGGAGGAAGCAGAAGCTCGACCTTTGATCAGTGACGTTGTAACTGCTCTCAGTTTTCTTTCTGCTGCTCCTGTTGCAGCACCCCGAAAGAGTAGTGCTGGTGAAAGCGAGAGTGGATCAGTATCCAGAAAGGGGAGCCGTAGATCATCAGTAGATACTGATGGCCGACTTCCGCCGGTTTCCTCTAAAAATAGTCGCAAAGGCAGCAAAAAATCTTCACTGAAACTGTTAAGCCAGAAGGTAAGCCAAAAATCTTCTGAGGAAGATTTAGGGCAGAAGAGCAGCAAAAAGTCCTCCAAGAGCAGCAGAAAATCTTCCCTGAGAGGTTTAAGCCAAAAGAGCAGTAAAAAATCTTCTAGCAGAAAGAGTAGCAAAGAATCGGAGGATGGAAGCGTTTCCTCAAGCTGCCGTAGCAGCAGTTTGGCATCAGATGATGAAAGGTCTGTGTCAGGTCGTAGCAGCATGAGGCTATCACAAGCGAGTGATCAATCTGACTCCAACTACAGCAGCAGAAGGACAGAGGATGCGGACCATAACTTACTAGACCGTGCAAGCACCATGGAATCTGATGTGGGAAGTGGTCACCCTTTTGACCAAACTAGCAGCAGTGGATCAAGCGTTTACTCTCGATAA 1497 0.4516 MKKQKSDDQISVDPENIKVKAFTFRELATATKNFRQDCLLDEGCFGRVYKGVIPATGQVVAVKQLDRNGIGKEILDAVSDLSLLQHENLVNLIGYCADGDQRLLVYELFSGRTLESRIFENKEDEAPLNWFDRMKILAGASKGLEYLHESSDPPVIFKDLKASSILVDNDFNVKLRDVGMTKLSGDKMNNGPPRLMGNNGYCAPEYVRTGQVTKKSDVYSFGVILLELITGRRAIDTTRPNEEQNLVAWATPLFRDPKRYPDMADPVLKKNFPDKDLNQVVAIASMCLQEEAEARPLISDVVTALSFLSAAPVAAPRKSSAGESESGSVSRKGSRRSSVDTDGRLPPVSSKNSRKGSKKSSLKLLSQKVSQKSSEEDLGQKSSKKSSKSSRKSSLRGLSQKSSKKSSSRKSSKESEDGSVSSSCRSSSLASDDERSVSGRSSMRLSQASDQSDSNYSSRRTEDADHNLLDRASTMESDVGSGHPFDQTSSSGSSVYSR 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2304g00008 498 ProSiteProfiles Protein kinase domain profile. 34 308 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2304g00008 498 SUPERFAMILY Protein kinase-like (PK-like) 11 308 IPR011009 -
Vium2304g00008 498 Gene3D Transferase(Phosphotransferase) domain 1 110 310 - -
Vium2304g00008 498 Pfam Protein kinase domain 40 302 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2304g00008 498 MobiDBLite consensus disorder prediction 343 373 - -
Vium2304g00008 498 MobiDBLite consensus disorder prediction 480 498 - -
Vium2304g00008 498 MobiDBLite consensus disorder prediction 314 498 - -
Vium2304g00008 498 FunFam Serine/threonine-protein kinase PBS1 109 323 - -
Vium2304g00008 498 MobiDBLite consensus disorder prediction 417 455 - -
Vium2304g00008 498 PANTHER OS07G0668900 PROTEIN 9 317 - -
Vium2304g00008 498 Gene3D Phosphorylase Kinase; domain 1 1 108 - -
Vium2304g00008 498 MobiDBLite consensus disorder prediction 456 472 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2304g00008 Vium-Chr2304 69804 71841 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2304g00008 2 312 Glycoside Hydrolase AT3G07070 60.952 1.07e-138 404
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Vium2304g00008 Pkinase 1.5e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2304g00008 - - vum:124829893 827.394