Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2303g00027 ATGATCATGGTAGGTTTGGAGTACAACATCGATGATCTGTTTGAAGAAGCTAAGAAGCGATGGCTCAAGCCTGTCGAAGTGCTTTACATTTTACGAAATCACGACATGTGCGAGCTTACCCACCAGCCCCCTCATCAGCCAGCTGGCGGATCCCTATATCTGTTTAATAGAAGAGTCACGCGTTACTTCCGCAAAGATGGTCATAACTGGCGGAAGAAAAAAGACGGAAGAACTGTGGGAGAAGCACATGAACGGCTTAAGGTTGGAAATGAAGAAATCCTAAACTGCTACTATGCACATGGAGAAGAGAACCGTTCTTTTCAGAGACGGAGCTATTGGATGTTGGAGCCGAAATATGAGCATATTGTTCTGGTGCATTATAGTGAAACAAGTAAGGGGAAATCCAACTCACAATTGTCGTCGGGTTCCTCTCTTGCTTTTAGTCAGAGTCAAAGCCCGTATGCTGCTCACGAACCAGGGACATCATCCATTTTTGTTGATTCATATGAACTTAATCACAATTTCTCTAGTCCTCCTGGGTCTTTAGAAGTTACATCTGAAGCACAAGCCTTACGCCAATTAGAAGAAGAGCTGAATACAAATGAGGACAGCTTCAATGAAAGGGTGATTTATAAAGATAAATCTACTATTTTGTCTTTACCAAATGATCAAGGGCCGTTAAGATATAATGGAAGACAAGATAACAGTGACACATACTGTCATGACTTCCCTGATGATTATCCTGATGGAAATGAAAAAACTATATGCTGGACCGAGGTGCTTGAAGCATGCAAGCCCTTGCCTGTGACCAATATACCAGATCAATATGGATATGAGGCATTTGAAAATGAACAGTCGTTATTTTATTCGGGAAGGGATATGATTGCCAACATGGAAAACAATCGGTGGCCAAACTCCAATTGTAATAATGTTGAGAACTCTGTTTTTGCACTTCCTCAAGGCGACAGTGGGGTCAAATTTCCTCTATGTTCTCGGGTAGAAAATCCAGTAACTACCTCTGACTACTATGGAACATTTTTTGACCAAACCCAAATTCAAGAACCTCTGGGTGTAGATTCAAGCTTGACTGTTGAACGGAAACAGAAATTTACAATTAGGACAGTCTCCCCAGAATGCTGCTATGCCACTGAGACCACAAAGGTTGTCATCATTGGATCATTTCTCTATCATCACCCGGATTCTACTTGGGCCTGTATGTTTGGTGATGTTGAAGTTCCTGCTAAGATTATTCAGGATGGCGTAATCAGTTGTGAAACTCCTTCCAATCTTCGTGGAAAGGTTAAGTTGTGCATTACTTCCGGAAATAGGGTGCCTTGCAGTGAAGTGATTGAGTTTGAGTTTCGAAATAAGGCTACTAGTTGCACTCGCTGTAATTCATTAGAAACAGAAGATGGCAGAAGTCCAGAAGATCTGCTATTACTTGTTCGATTTGCTGAGATGCTCCACTCTTCAACTAAAAAGGATGACAGCACAGAATCTGGAAGTCACCTTTCAACAGAACAGAAAGATGGTGATGATTCATGGAGCCATATGATTGACACTCTTCTAGTTGGCAGTGGAAAATCATCTGATACTGTTAACTGGCTTCTAGAAGAGCTGCTGAAGGATAAGCTGCAGCTCTGGCTCTCTAACCGATGCTATGAAAGAGATGAAGGGACAGACTGTTCTTTGTCCAAGAAAGAGCAGGGAATTATACACATGATTTCTGGGTTGGGTTTTGAGTGGGCCTTGAACCCCATTCTCAGTTGCGGTGTGAATATAAATTTCCGTGACATCAATGGATGGACAGCCCTACATTGGGCTGCAAAGTTTGGGAGGGAAAAAATGGTTGCTTCACTTATAGCTTCTGGTGCATCTGCTGAAGCGGTGACAGATCCAAGTTCACAAAATCCAAGCGGTGAAACTGCTGCATCTGTTGCAGCCTCCCATGGCCATAAGGGACTGGCAGGTTATCTTTCTGAGGTACACCTAACAAGCCACTTGTCATCCCTCACTTTGACAGCGAGTAAGATTTCTGAAGGATCTTCTGAGCTCGAAGCCGAGTTAACTGTCAGCAATGTCTCTGAAGAAAATATCGTGGCCAGTGAGGATCAGGTTTCACTAAAAGCTTCCTTGGATGCTGTCAGAAATGCAACTCAGGCAGCTGCACGGATACAAGATGCTTTTCGTGCACATTCTTTTAGAAAACGGAAAGCAAGAGAAGCTGCTGCAGCTGCTGCTGCTGCAGCATGTCTAGATGGATATTGTATTGATCCATGTTGCAACAATGATAACATGTCAGTGCTTTCTGCCATGTCAAAACTTAGTTCTCGGAGCTTGGGTGATTACAATTTAGCTGCCTTGTCGATTCAGAAGAAATATCGAGGTTGGAAAGGTCGCAAAGAATTCTTAGCATTGCGCCAAAAAGTAGTTAAGATACAGGCCATTGTGAGGGGTTACCAGGCTCGGAAGCAATACAAGATACTATTATGGGCAGTTGGAATCCTGAATAAGGTTGTGCTACGATGGAGGAGAAAACGCGTTGGTATAACTAGTGTCCGGCAAGAAATGGATTCAAATGAAGAAGAAAGTGATGATGAAGATTTTCTCAACGCGTTCCGGAAAGAGAAAGTAAATGGAGCAATTCAGATGGCTTTGAAGCGGGTGCTTTCCATGGTCCGTCATGAGGATGCTCGCCACCAATACAGGCGCTTGCTTTCATTGTATCGTCAAGCCAAGACTGAACGTGACAGTACAAGTGATGAAGCACCGTCATCAACTTCAGAAGAGGACCCTCTCAATATGGAAGACGATGATTGGGATCTGTTATGGCAAAAATTATGTGCTTAG 2850 0.4316 MIMVGLEYNIDDLFEEAKKRWLKPVEVLYILRNHDMCELTHQPPHQPAGGSLYLFNRRVTRYFRKDGHNWRKKKDGRTVGEAHERLKVGNEEILNCYYAHGEENRSFQRRSYWMLEPKYEHIVLVHYSETSKGKSNSQLSSGSSLAFSQSQSPYAAHEPGTSSIFVDSYELNHNFSSPPGSLEVTSEAQALRQLEEELNTNEDSFNERVIYKDKSTILSLPNDQGPLRYNGRQDNSDTYCHDFPDDYPDGNEKTICWTEVLEACKPLPVTNIPDQYGYEAFENEQSLFYSGRDMIANMENNRWPNSNCNNVENSVFALPQGDSGVKFPLCSRVENPVTTSDYYGTFFDQTQIQEPLGVDSSLTVERKQKFTIRTVSPECCYATETTKVVIIGSFLYHHPDSTWACMFGDVEVPAKIIQDGVISCETPSNLRGKVKLCITSGNRVPCSEVIEFEFRNKATSCTRCNSLETEDGRSPEDLLLLVRFAEMLHSSTKKDDSTESGSHLSTEQKDGDDSWSHMIDTLLVGSGKSSDTVNWLLEELLKDKLQLWLSNRCYERDEGTDCSLSKKEQGIIHMISGLGFEWALNPILSCGVNINFRDINGWTALHWAAKFGREKMVASLIASGASAEAVTDPSSQNPSGETAASVAASHGHKGLAGYLSEVHLTSHLSSLTLTASKISEGSSELEAELTVSNVSEENIVASEDQVSLKASLDAVRNATQAAARIQDAFRAHSFRKRKAREAAAAAAAAACLDGYCIDPCCNNDNMSVLSAMSKLSSRSLGDYNLAALSIQKKYRGWKGRKEFLALRQKVVKIQAIVRGYQARKQYKILLWAVGILNKVVLRWRRKRVGITSVRQEMDSNEEESDDEDFLNAFRKEKVNGAIQMALKRVLSMVRHEDARHQYRRLLSLYRQAKTERDSTSDEAPSSTSEEDPLNMEDDDWDLLWQKLCA 949
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2303g00027 949 SMART iq_5 805 827 IPR000048 GO:0005515
Vium2303g00027 949 SMART iq_5 717 739 IPR000048 GO:0005515
Vium2303g00027 949 SMART iq_5 782 804 IPR000048 GO:0005515
Vium2303g00027 949 SMART CG_1_2 13 131 IPR005559 GO:0003677
Vium2303g00027 949 MobiDBLite consensus disorder prediction 492 513 - -
Vium2303g00027 949 ProSiteProfiles Ankyrin repeat profile. 600 632 IPR002110 GO:0005515
Vium2303g00027 949 ProSiteProfiles CG-1 DNA-binding domain profile. 10 136 IPR005559 GO:0003677
Vium2303g00027 949 Coils Coil 184 204 - -
Vium2303g00027 949 Gene3D Immunoglobulins 365 460 IPR013783 -
Vium2303g00027 949 ProSiteProfiles IQ motif profile. 783 812 IPR000048 GO:0005515
Vium2303g00027 949 MobiDBLite consensus disorder prediction 913 938 - -
Vium2303g00027 949 Pfam IPT/TIG domain 371 442 IPR002909 -
Vium2303g00027 949 ProSiteProfiles IQ motif profile. 806 830 IPR000048 GO:0005515
Vium2303g00027 949 SUPERFAMILY Ankyrin repeat 571 662 IPR036770 -
Vium2303g00027 949 FunFam Calmodulin-binding transcription activator 2 782 830 - -
Vium2303g00027 949 Pfam IQ calmodulin-binding motif 808 827 IPR000048 GO:0005515
Vium2303g00027 949 Pfam IQ calmodulin-binding motif 786 803 IPR000048 GO:0005515
Vium2303g00027 949 SMART ANK_2a 600 629 IPR002110 GO:0005515
Vium2303g00027 949 SMART ANK_2a 639 668 IPR002110 GO:0005515
Vium2303g00027 949 Pfam Ankyrin repeats (3 copies) 584 660 IPR002110 GO:0005515
Vium2303g00027 949 Pfam CG-1 domain 16 129 IPR005559 GO:0003677
Vium2303g00027 949 ProSiteProfiles Ankyrin repeat region circular profile. 600 629 - -
Vium2303g00027 949 SUPERFAMILY E set domains 371 455 IPR014756 -
Vium2303g00027 949 Coils Coil 895 915 - -
Vium2303g00027 949 FunFam Calmodulin-binding transcription activator 4 isoform A 482 665 - -
Vium2303g00027 949 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 783 834 IPR027417 -
Vium2303g00027 949 CDD IPT 371 455 - -
Vium2303g00027 949 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 9 915 - -
Vium2303g00027 949 ProSiteProfiles IQ motif profile. 718 747 IPR000048 GO:0005515
Vium2303g00027 949 Gene3D - 783 830 - -
Vium2303g00027 949 Gene3D - 548 669 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2303g00027 Vium-Chr2303 131119 141559 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2303g00027 257 944 CAMTA Transcription Factor Family AT1G67310 51.942 0.0 607
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Vium2303g00027 CG-1 1e-46 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2303g00027 K21596 - gmx:100791430 1342.79