Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2303g00026 ATGACACCTGGTTTGGAGTACAACATCGATGATCTGTTTGAAGAAGCTAAGAAGCGATGGCTCAAGCCTGTCGAAGTGCTTTACATTTTACGAAATCACGACATGTGCGAGCTTACCCACCAGCCCCCTCATCAGCCAGCTGGCGGATCCCTATATCTGTTTAATAGAAGAGTCACGCGTTACTTCCGCAAAGATGGTCATAACTGGCGGAAGAAAAAAGACGGAAGAACTGTGGGAGAAGCACATGAACGGCTTAAGGTTGGAAATGAAGAAATCCTAAACTGCTACTATGCACATGGAGAAGAGAACCGTTCTTTTCAGAGACGGAGCTATTGGATGTTGGAGCCGAAATATGAGCATATTGTTCTGGTGCATTATAGTGAAACAAGTAAGGGGAAATCCAACTCACAATTGTCGTCGGGTTCCTCTCTTGCTTTTAGTCAGAGTCAAAGCCCGTATGCTGCTCACGAACCAGGGACATCATCCATTTTTGTTGATTCATATGAACTTAATCACAATTTCTCTAGTCCTCCTGGGTCTTTAGAAGTTACATCTGAAGCACAAGCCTTACGCCAATTAGAAGAAGAGCTGAATACAAATGAGGACAGCTTCAATGAAAGGGTGATTTATAAAGATAAATCTACTATTTTGTCTTTACCAAATGATCAAGGGCCGTTAAGATATAATGGAAGACAAGATAACAGTGACACATACTGTCATGACTTCCCTGATGATTATCCTGATGGAAATGAAAAAACTATATGCTGGACCGAGGTGCTTGAAGCATGCAAGCCCTTGCCTGTGACCAATATACCAGATCAATATGGATATGAGGCATTTGAAAATGAACAGTCGTTATTTTATTCGGGAAGGGATATGATTGCCAACATGGAAAACAATCGGTGGCCAAACTCCAATTGTAATAATGTTGAGAACTCTGTTTTTGCACTTCCTCAAGGCGACAGTGGGGTCAAATTTCCTCTATGTTCTCGGGTAGAAAATCCAGTAACTACCTCTGACTACTATGGAACATTTTTTGACCAAACCCAAATTCAAGAACCTCTGGGTGTAGATTCAAGCTTGACTGTTGAACGGAAACAGAAATTTACAATTAGGACAGTCTCCCCAGAATGCTGCTATGCCACTGAGACCACAAAGGTTGTCATCATTGGATCATTTCTCTATCATCACCCGGATTCTACTTGGGCCTGTATGTTTGGTGATGTTGAAGTTCCTGCTAAGATTATTCAGGATGGCGTAATCAGTTGTGAAACTCCTTCCAATCTTCGTGGAAAGGTTAAGTTGTGCATTACTTCCGGAAATAGGGTGCCTTGCAGTGAAGTGATTGAGTTTGAGTTTCGAAATAAGGCTACTAGTTGCACTCGCTGTAATTCATTAGAAACAGAAGATGGCAGAAGTCCAGAAGATCTGCTATTACTTGTTCGATTTGCTGAGATGCTCCACTCTTCAACTAAAAAGGATGACAGCACAGAATCTGGAAGTCACCTTTCAACAGAACAGAAAGATGGTGATGATTCATGGAGCCATATGATTGACACTCTTCTAGTTGGCAGTGGAAAATCATCTGATACTGTTAACTGGCTTCTAGAAGAGCTGCTGAAGGATAAGCTGCAGCTCTGGCTCTCTAACCGATGCTATGAAAGAGATGAAGGGACAGACTGTTCTTTGTCCAAGAAAGAGCAGGGAATTATACACATGATTTCTGGGTTGGGTTTTGAGTGGGCCTTGAACCCCATTCTCAGTTGCGGTGTGAATATAAATTTCCGTGACATCAATGGATGGACAGCCCTACATTGGGCTGCAAAGTTTGGGAGGGAAAAAATGGTTGCTTCACTTATAGCTTCTGGTGCATCTGCTGAAGCGGTGACAGATCCAAGTTCACAAAATCCAAGCGGTGAAACTGCTGCATCTGTTGCAGCCTCCCATGGCCATAAGGGACTGGCAGGTTATCTTTCTGAGGTACACCTAACAAGCCACTTGTCATCCCTCACTTTGACAGCGAGTAAGATTTCTGAAGGATCTTCTGAGCTCGAAGCCGAGTTAACTGTCAGCAATGTCTCTGAAGAAAATATCGTGGCCAGTGAGGATCAGGTTTCACTAAAAGCTTCCTTGGATGCTGTCAGAAATGCAACTCAGGCAGCTGCACGGATACAAGATGCTTTTCGTGCACATTCTTTTAGAAAACGGAAAGCAAGAGAAGCTGCTGCAGCTGCTGCTGCTGCAGCATGTCTAGATGGATATTGTATTGATCCATGTTGCAACAATGATAACATGTCAGTGCTTTCTGCCATGTCAAAACTTAGTTCTCGGAGCTTGGGTGATTACAATTTAGCTGCCTTGTCGATTCAGAAGAAATATCGAGGTTGGAAAGGTCGCAAAGAATTCTTAGCATTGCGCCAAAAAGTAGTTAAGATACAGGCCATTGTGAGGGGTTACCAGGCTCGGAAGCAATACAAGATACTATTATGGGCAGTTGGAATCCTGAATAAGGTTGTGCTACGATGGAGGAGAAAACGCGTTGGTATAACTAGTGTCCGGCAAGAAATGGATTCAAATGAAGAAGAAAGTGATGATGAAGATTTTCTCAACGCGTTCCGGAAAGAGAAAGTAAATGGAGCAATTCAGATGGCTTTGAAGCGGGTGCTTTCCATGGTCCGTCATGAGGATGCTCGCCACCAATACAGGCGCTTGCTTTCATTGTATCGTCAAGCCAAGACTGAACGTGACAGTACAAGTGATGAAGCACCGTCATCAACTTCAGAAGAGGACCCTCTCAATATGGAAGACGATGATTGGGATCTGTTATGGCAAAAATTATGTGCTTAG 2847 0.432 MTPGLEYNIDDLFEEAKKRWLKPVEVLYILRNHDMCELTHQPPHQPAGGSLYLFNRRVTRYFRKDGHNWRKKKDGRTVGEAHERLKVGNEEILNCYYAHGEENRSFQRRSYWMLEPKYEHIVLVHYSETSKGKSNSQLSSGSSLAFSQSQSPYAAHEPGTSSIFVDSYELNHNFSSPPGSLEVTSEAQALRQLEEELNTNEDSFNERVIYKDKSTILSLPNDQGPLRYNGRQDNSDTYCHDFPDDYPDGNEKTICWTEVLEACKPLPVTNIPDQYGYEAFENEQSLFYSGRDMIANMENNRWPNSNCNNVENSVFALPQGDSGVKFPLCSRVENPVTTSDYYGTFFDQTQIQEPLGVDSSLTVERKQKFTIRTVSPECCYATETTKVVIIGSFLYHHPDSTWACMFGDVEVPAKIIQDGVISCETPSNLRGKVKLCITSGNRVPCSEVIEFEFRNKATSCTRCNSLETEDGRSPEDLLLLVRFAEMLHSSTKKDDSTESGSHLSTEQKDGDDSWSHMIDTLLVGSGKSSDTVNWLLEELLKDKLQLWLSNRCYERDEGTDCSLSKKEQGIIHMISGLGFEWALNPILSCGVNINFRDINGWTALHWAAKFGREKMVASLIASGASAEAVTDPSSQNPSGETAASVAASHGHKGLAGYLSEVHLTSHLSSLTLTASKISEGSSELEAELTVSNVSEENIVASEDQVSLKASLDAVRNATQAAARIQDAFRAHSFRKRKAREAAAAAAAAACLDGYCIDPCCNNDNMSVLSAMSKLSSRSLGDYNLAALSIQKKYRGWKGRKEFLALRQKVVKIQAIVRGYQARKQYKILLWAVGILNKVVLRWRRKRVGITSVRQEMDSNEEESDDEDFLNAFRKEKVNGAIQMALKRVLSMVRHEDARHQYRRLLSLYRQAKTERDSTSDEAPSSTSEEDPLNMEDDDWDLLWQKLCA 948
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2303g00026 948 Pfam IQ calmodulin-binding motif 807 826 IPR000048 GO:0005515
Vium2303g00026 948 Pfam IQ calmodulin-binding motif 785 802 IPR000048 GO:0005515
Vium2303g00026 948 ProSiteProfiles Ankyrin repeat profile. 599 631 IPR002110 GO:0005515
Vium2303g00026 948 Pfam CG-1 domain 15 128 IPR005559 GO:0003677
Vium2303g00026 948 Coils Coil 894 914 - -
Vium2303g00026 948 SUPERFAMILY E set domains 370 454 IPR014756 -
Vium2303g00026 948 CDD IPT 370 454 - -
Vium2303g00026 948 Coils Coil 183 203 - -
Vium2303g00026 948 Pfam IPT/TIG domain 370 441 IPR002909 -
Vium2303g00026 948 SMART ANK_2a 638 667 IPR002110 GO:0005515
Vium2303g00026 948 SMART ANK_2a 599 628 IPR002110 GO:0005515
Vium2303g00026 948 ProSiteProfiles IQ motif profile. 805 829 IPR000048 GO:0005515
Vium2303g00026 948 Gene3D Immunoglobulins 364 459 IPR013783 -
Vium2303g00026 948 FunFam Calmodulin-binding transcription activator 4 isoform A 481 664 - -
Vium2303g00026 948 MobiDBLite consensus disorder prediction 912 937 - -
Vium2303g00026 948 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 782 833 IPR027417 -
Vium2303g00026 948 Gene3D - 547 668 IPR036770 -
Vium2303g00026 948 ProSiteProfiles IQ motif profile. 782 811 IPR000048 GO:0005515
Vium2303g00026 948 SMART CG_1_2 12 130 IPR005559 GO:0003677
Vium2303g00026 948 ProSiteProfiles IQ motif profile. 717 746 IPR000048 GO:0005515
Vium2303g00026 948 ProSiteProfiles CG-1 DNA-binding domain profile. 9 135 IPR005559 GO:0003677
Vium2303g00026 948 SUPERFAMILY Ankyrin repeat 570 661 IPR036770 -
Vium2303g00026 948 MobiDBLite consensus disorder prediction 491 512 - -
Vium2303g00026 948 Gene3D - 782 829 - -
Vium2303g00026 948 ProSiteProfiles Ankyrin repeat region circular profile. 599 628 - -
Vium2303g00026 948 FunFam Calmodulin-binding transcription activator 2 781 829 - -
Vium2303g00026 948 Pfam Ankyrin repeats (3 copies) 583 659 IPR002110 GO:0005515
Vium2303g00026 948 SMART iq_5 716 738 IPR000048 GO:0005515
Vium2303g00026 948 SMART iq_5 804 826 IPR000048 GO:0005515
Vium2303g00026 948 SMART iq_5 781 803 IPR000048 GO:0005515
Vium2303g00026 948 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 8 914 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2303g00026 Vium-Chr2303 131119 141559 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2303g00026 256 943 CAMTA Transcription Factor Family AT1G67310 51.942 0.0 607
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Vium2303g00026 CG-1 1e-46 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2303g00026 K21596 - gmx:100791430 1347.03