Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2303g00025 ATGATCATGGTAGGTTTGGAGTACAACATCGATGATCTGTTTGAAGAAGCTAAGAAGCGATGGCTCAAGCCTGTCGAAGTGCTTTACATTTTACGAAATCACGACATGTGCGAGCTTACCCACCAGCCCCCTCATCAGCCAGCTGGCGGATCCCTATATCTGTTTAATAGAAGAGTCACGCGTTACTTCCGCAAAGATGGTCATAACTGGCGGAAGAAAAAAGACGGAAGAACTGTGGGAGAAGCACATGAACGGCTTAAGGTTGGAAATGAAGAAATCCTAAACTGCTACTATGCACATGGAGAAGAGAACCGTTCTTTTCAGAGACGGAGCTATTGGATGTTGGAGCCGAAATATGAGCATATTGTTCTGGTGCATTATAGTGAAACAAGTAAGGGGAAATCCAACTCACAATTGTCGTCGGGTTCCTCTCTTGCTTTTAGTCAGAGTCAAAGCCCGTATGCTGCTCACGAACCAGGGACATCATCCATTTTTGTTGATTCATATGAACTTAATCACAATTTCTCTAGTCCTCCTGGGTCTTTAGAAGTTACATCTGAAGCACAAGCCTTACGCCAATTAGAAGAAGAGCTGAATACAAATGAGGACAGCTTCAATGAAAGGGTGATTTATAAAGATAAATCTACTATTTTGTCTTTACCAAATGATCAAGGGCCGTTAAGATATAATGGAAGACAAGATAACAGTGACACATACTGTCATGACTTCCCTGATGATTATCCTGATGGAAATGAAAAAACTATATGCTGGACCGAGGTGCTTGAAGCATGCAAGCCCTTGCCTGTGACCAATATACCAGATCAATATGGATATGAGGCATTTGAAAATGAACAGTCGTTATTTTATTCGGGAAGGGATATGATTGCCAACATGGAAAACAATCGGTGGCCAAACTCCAATTCTGTTTTTGCACTTCCTCAAGGCGACAGTGGGGTCAAATTTCCTCTATGTTCTCGGGTAGAAAATCCAGTAACTACCTCTGACTACTATGGAACATTTTTTGACCAAACCCAAATTCAAGAACCTCTGGGTGTAGATTCAAGCTTGACTGTTGAACGGAAACAGAAATTTACAATTAGGACAGTCTCCCCAGAATGCTGCTATGCCACTGAGACCACAAAGGTTGTCATCATTGGATCATTTCTCTATCATCACCCGGATTCTACTTGGGCCTGTATGTTTGGTGATGTTGAAGTTCCTGCTAAGATTATTCAGGATGGCGTAATCAGTTGTGAAACTCCTTCCAATCTTCGTGGAAAGGTTAAGTTGTGCATTACTTCCGGAAATAGGGTGCCTTGCAGTGAAGTGATTGAGTTTGAGTTTCGAAATAAGGCTACTAGTTGCACTCGCTGTAATTCATTAGAAACAGAAGATGGCAGAAGTCCAGAAGATCTGCTATTACTTGTTCGATTTGCTGAGATGCTCCACTCTTCAACTAAAAAGGATGACAGCACAGAATCTGGAAGTCACCTTTCAACAGAACAGAAAGATGGTGATGATTCATGGAGCCATATGATTGACACTCTTCTAGTTGGCAGTGGAAAATCATCTGATACTGTTAACTGGCTTCTAGAAGAGCTGCTGAAGGATAAGCTGCAGCTCTGGCTCTCTAACCGATGCTATGAAAGAGATGAAGGGACAGACTGTTCTTTGTCCAAGAAAGAGCAGGGAATTATACACATGATTTCTGGGTTGGGTTTTGAGTGGGCCTTGAACCCCATTCTCAGTTGCGGTGTGAATATAAATTTCCGTGACATCAATGGATGGACAGCCCTACATTGGGCTGCAAAGTTTGGGAGGGAAAAAATGGTTGCTTCACTTATAGCTTCTGGTGCATCTGCTGAAGCGGTGACAGATCCAAGTTCACAAAATCCAAGCGGTGAAACTGCTGCATCTGTTGCAGCCTCCCATGGCCATAAGGGACTGGCAGGTTATCTTTCTGAGGTACACCTAACAAGCCACTTGTCATCCCTCACTTTGACAGCGAGTAAGATTTCTGAAGGATCTTCTGAGCTCGAAGCCGAGTTAACTGTCAGCAATGTCTCTGAAGAAAATATCGTGGCCAGTGAGGATCAGGTTTCACTAAAAGCTTCCTTGGATGCTGTCAGAAATGCAACTCAGGCAGCTGCACGGATACAAGATGCTTTTCGTGCACATTCTTTTAGAAAACGGAAAGCAAGAGAAGCTGCTGCAGCTGCTGCTGCTGCAGCATGTCTAGATGGATATTGTATTGATCCATGTTGCAACAATGATAACATGTCAGTGCTTTCTGCCATGTCAAAACTTAGTTCTCGGAGCTTGGGTGATTACAATTTAGCTGCCTTGTCGATTCAGAAGAAATATCGAGGTTGGAAAGGTCGCAAAGAATTCTTAGCATTGCGCCAAAAAGTAGTTAAGATACAGGCCATTGTGAGGGGTTACCAGGCTCGGAAGCAATACAAGATACTATTATGGGCAGTTGGAATCCTGAATAAGGTTGTGCTACGATGGAGGAGAAAACGCGTTGGTATAACTAGTGTCCGGCAAGAAATGGATTCAAATGAAGAAGAAAGTGATGATGAAGATTTTCTCAACGCGTTCCGGAAAGAGAAAGTAAATGGAGCAATTCAGATGGCTTTGAAGCGGGTGCTTTCCATGGTCCGTCATGAGGATGCTCGCCACCAATACAGGCGCTTGCTTTCATTGTATCGTCAAGCCAAGACTGAACGTGACAGTACAAGTGATGAAGCACCGTCATCAACTTCAGAAGAGGACCCTCTCAATATGGAAGACGATGATTGGGATCTGTTATGGCAAAAATTATGTGCTTAG 2832 0.4326 MIMVGLEYNIDDLFEEAKKRWLKPVEVLYILRNHDMCELTHQPPHQPAGGSLYLFNRRVTRYFRKDGHNWRKKKDGRTVGEAHERLKVGNEEILNCYYAHGEENRSFQRRSYWMLEPKYEHIVLVHYSETSKGKSNSQLSSGSSLAFSQSQSPYAAHEPGTSSIFVDSYELNHNFSSPPGSLEVTSEAQALRQLEEELNTNEDSFNERVIYKDKSTILSLPNDQGPLRYNGRQDNSDTYCHDFPDDYPDGNEKTICWTEVLEACKPLPVTNIPDQYGYEAFENEQSLFYSGRDMIANMENNRWPNSNSVFALPQGDSGVKFPLCSRVENPVTTSDYYGTFFDQTQIQEPLGVDSSLTVERKQKFTIRTVSPECCYATETTKVVIIGSFLYHHPDSTWACMFGDVEVPAKIIQDGVISCETPSNLRGKVKLCITSGNRVPCSEVIEFEFRNKATSCTRCNSLETEDGRSPEDLLLLVRFAEMLHSSTKKDDSTESGSHLSTEQKDGDDSWSHMIDTLLVGSGKSSDTVNWLLEELLKDKLQLWLSNRCYERDEGTDCSLSKKEQGIIHMISGLGFEWALNPILSCGVNINFRDINGWTALHWAAKFGREKMVASLIASGASAEAVTDPSSQNPSGETAASVAASHGHKGLAGYLSEVHLTSHLSSLTLTASKISEGSSELEAELTVSNVSEENIVASEDQVSLKASLDAVRNATQAAARIQDAFRAHSFRKRKAREAAAAAAAAACLDGYCIDPCCNNDNMSVLSAMSKLSSRSLGDYNLAALSIQKKYRGWKGRKEFLALRQKVVKIQAIVRGYQARKQYKILLWAVGILNKVVLRWRRKRVGITSVRQEMDSNEEESDDEDFLNAFRKEKVNGAIQMALKRVLSMVRHEDARHQYRRLLSLYRQAKTERDSTSDEAPSSTSEEDPLNMEDDDWDLLWQKLCA 943
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2303g00025 943 CDD IPT 365 449 - -
Vium2303g00025 943 Coils Coil 889 909 - -
Vium2303g00025 943 SMART CG_1_2 13 131 IPR005559 GO:0003677
Vium2303g00025 943 ProSiteProfiles IQ motif profile. 800 824 IPR000048 GO:0005515
Vium2303g00025 943 SMART ANK_2a 633 662 IPR002110 GO:0005515
Vium2303g00025 943 SMART ANK_2a 594 623 IPR002110 GO:0005515
Vium2303g00025 943 ProSiteProfiles CG-1 DNA-binding domain profile. 10 136 IPR005559 GO:0003677
Vium2303g00025 943 Gene3D Immunoglobulins 359 454 IPR013783 -
Vium2303g00025 943 SUPERFAMILY E set domains 365 449 IPR014756 -
Vium2303g00025 943 ProSiteProfiles IQ motif profile. 712 741 IPR000048 GO:0005515
Vium2303g00025 943 ProSiteProfiles Ankyrin repeat profile. 594 626 IPR002110 GO:0005515
Vium2303g00025 943 SMART iq_5 799 821 IPR000048 GO:0005515
Vium2303g00025 943 SMART iq_5 711 733 IPR000048 GO:0005515
Vium2303g00025 943 SMART iq_5 776 798 IPR000048 GO:0005515
Vium2303g00025 943 Coils Coil 184 204 - -
Vium2303g00025 943 FunFam Calmodulin-binding transcription activator 4 isoform A 476 659 - -
Vium2303g00025 943 Gene3D - 777 824 - -
Vium2303g00025 943 Pfam IPT/TIG domain 365 436 IPR002909 -
Vium2303g00025 943 SUPERFAMILY Ankyrin repeat 565 656 IPR036770 -
Vium2303g00025 943 ProSiteProfiles Ankyrin repeat region circular profile. 594 623 - -
Vium2303g00025 943 MobiDBLite consensus disorder prediction 907 932 - -
Vium2303g00025 943 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 777 828 IPR027417 -
Vium2303g00025 943 Pfam IQ calmodulin-binding motif 780 797 IPR000048 GO:0005515
Vium2303g00025 943 Pfam IQ calmodulin-binding motif 802 821 IPR000048 GO:0005515
Vium2303g00025 943 Gene3D - 542 663 IPR036770 -
Vium2303g00025 943 ProSiteProfiles IQ motif profile. 777 806 IPR000048 GO:0005515
Vium2303g00025 943 Pfam Ankyrin repeats (3 copies) 578 654 IPR002110 GO:0005515
Vium2303g00025 943 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 9 909 - -
Vium2303g00025 943 FunFam Calmodulin-binding transcription activator 2 776 824 - -
Vium2303g00025 943 MobiDBLite consensus disorder prediction 486 507 - -
Vium2303g00025 943 Pfam CG-1 domain 16 129 IPR005559 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2303g00025 Vium-Chr2303 131119 141561 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2303g00025 257 938 CAMTA Transcription Factor Family AT1G67310 51.948 0.0 604
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Vium2303g00025 CG-1 1e-46 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2303g00025 K21596 - gmx:100791430 1326.23