Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2303g00017 ATGGAGTGGAATGCAAAATCTCTCGGACAATGGGACTGGGAGCACTTATTCTTCTTCAATACAAAAGCAACAGAAAATCCGAGGTTACCAACAACTGATTGTAGCAACGAAGCAGATCGAGAAATCAATGTTGGGGTGTTTTATCCATCAGGTGGGAGTGCATGTTCTGGGTCTGAACTAGTACATGCTTCTTCACCAAGGAGCTCAAAATCAGCTTCCAATAATTCACTGTCAAATGAGGATAGCAAGGCATCGGTGTTGACTCTGGAAGGTTCTCAGGATGATTCCACTGGGAAGAAAGAACTGTGCCCAGTTGAAACTTCTCAATCAGCAGTTCCTTCTCCAGTCTCTGGTGAACCTTTGCTCACTCTGAAGCTTGGCAAACGGTTGTACTTTGAGGATGTATGCGCAGGAAGTGATTCCAAGAAAGCATCTTCCTTTGAGGTTCCAATTTCTTCAGGAAAGAAATATAAAACCAGTAATCAGAATTTGCAGCATCCAAGCTGCCAGGTGGAAGGCTGTGACCTTGACCTTTCATCTGCTAAAGATTACCATCGCAAACACAGAGTGTGTGAAGGTCATTCCAAATCCCCTAAGGTGCTTGTAGCTGGTTTGGAGCGCCGATTTTGCCAGCAATGTAGCAGGTTCCATGCTCTGTCAGAGTTTGATGACAAAAAAAGAAGCTGCAGAAAACGTCTCTCAGATCATAATGCAAGGCGTCGAAAACCACAGCCTGACTCAGTCCAATTAAATCCATCAGCGTTGTCTTCGTCGCCTTATGATGGGAGGCAAATGATGAGTCCATTTGCATTTTCAAGAAGTGCTACAAACATGGGCTGGCAGAATTTGCATAGCAACAAGCTCCCCCAGACAAAAGATTTTCTTCCGAAGCCTGCAAAAGCCTTTGATAAGATACCCAGTATTGTATCCATGTTTTCTGATGATAACAGTGGTCTTCTAACATCCAGAAGTATAGCAGCGAAGACTATTGTTCCAGGTTTAGAAGATCCGAATTCCATTAGTTCGTGTGATCCAAATGGTGCACAAGATGTTAACCGTGCTCTCTCTCTTCTGTCAAGCAATTCATGGGGTCCATATGAGACTAAGTTCCTATCACTGGAACGCTCCTCTAGAACACAATCGATGACGCACCACCAGCAGCGCTTACCGCTTGCTTCCTCTTCGGAATATTGGCACACTGATCATCAACAACAACAACCTTCCCCTTCCACCATGAGCATGTGCATCTCATTCTCAGACTGTGATACCAACAATCGCTTTCAAGACTTTCAGCTGTTGAGTGCACCCTATGACTCGCCTTTTCCATGCAACCATCTGGATTGA 1344 0.4464 MEWNAKSLGQWDWEHLFFFNTKATENPRLPTTDCSNEADREINVGVFYPSGGSACSGSELVHASSPRSSKSASNNSLSNEDSKASVLTLEGSQDDSTGKKELCPVETSQSAVPSPVSGEPLLTLKLGKRLYFEDVCAGSDSKKASSFEVPISSGKKYKTSNQNLQHPSCQVEGCDLDLSSAKDYHRKHRVCEGHSKSPKVLVAGLERRFCQQCSRFHALSEFDDKKRSCRKRLSDHNARRRKPQPDSVQLNPSALSSSPYDGRQMMSPFAFSRSATNMGWQNLHSNKLPQTKDFLPKPAKAFDKIPSIVSMFSDDNSGLLTSRSIAAKTIVPGLEDPNSISSCDPNGAQDVNRALSLLSSNSWGPYETKFLSLERSSRTQSMTHHQQRLPLASSSEYWHTDHQQQQPSPSTMSMCISFSDCDTNNRFQDFQLLSAPYDSPFPCNHLD 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2303g00017 447 Pfam SBP domain 169 242 IPR004333 GO:0003677
Vium2303g00017 447 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 58 395 IPR044817 GO:0003677
Vium2303g00017 447 MobiDBLite consensus disorder prediction 233 262 - -
Vium2303g00017 447 FunFam Squamosa promoter-binding-like protein 14 160 230 - -
Vium2303g00017 447 MobiDBLite consensus disorder prediction 58 116 - -
Vium2303g00017 447 MobiDBLite consensus disorder prediction 244 262 - -
Vium2303g00017 447 Gene3D - 159 230 IPR036893 GO:0003677|GO:0005634
Vium2303g00017 447 MobiDBLite consensus disorder prediction 58 93 - -
Vium2303g00017 447 SUPERFAMILY SBT domain 167 248 IPR036893 GO:0003677|GO:0005634
Vium2303g00017 447 ProSiteProfiles Zinc finger SBP-type profile. 166 243 IPR004333 GO:0003677
Vium2303g00017 447 MobiDBLite consensus disorder prediction 102 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2303g00017 Vium-Chr2303 107668 112734 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2303g00017 1 401 SBP-box Gene Family AT5G43270 37.269 4.68e-59 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Vium2303g00017 SBP 8.8e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2303g00017 - - gmx:100796013 709.138