Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2303g00002 ATGATTGCTATGGCGGAGGAAGAAGAGAACGGGGTGTCGATTGAACTCGAATTCCCGAAGAGTCGGGTTAAGAAGATCATGACGCTGGACAAGGATGTGAAGAGAGTGAGTTCAGAAGCGTTGTTCCTGGTGTCGCGCTCCACAGAGTTGTTCCTCCAATTTCTGGCTGAAAAATCTGCCAAAGTTGCTATTGAAAAGAAACGGAAGACCGTGAATCTGGAACACGTGAGAATGGCCGTTAAGAGGCACCAGCCAACCAGGGATTTTCTCCTCGATGATCTTCCGCCTCCGTCTGAGCCCTCCAAACCCGATGGGCCCGCCAAGCCCGTGGTTCGTCCCAAACTTGATGCTGCGCCGTCTGGTACTCGTCGCATCGATCAGTTTTTCCGAAAGCCAGAGCCTCAAAACCCAACCCAAGCTCAATCGCCTGAAAATCCAGCCCAAGCTCAATCGTCTGAAATTCCTGCCCAAGCTCAAGCGCCCGAAATACCTTCTCAAACTGAATCGCCTGAAGTTCCTTCTGAAACTCAATCGCCTGAAGTTCCTTCTGAAACTCAATCGCCTGAAGCTCCTTCTCAAACTCGATTGCCATTTCCCGTACATGAGTCTTAG 612 0.5065 MIAMAEEEENGVSIELEFPKSRVKKIMTLDKDVKRVSSEALFLVSRSTELFLQFLAEKSAKVAIEKKRKTVNLEHVRMAVKRHQPTRDFLLDDLPPPSEPSKPDGPAKPVVRPKLDAAPSGTRRIDQFFRKPEPQNPTQAQSPENPAQAQSSEIPAQAQAPEIPSQTESPEVPSETQSPEVPSETQSPEAPSQTRLPFPVHES 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2303g00002 203 SUPERFAMILY Histone-fold 15 83 IPR009072 GO:0046982
Vium2303g00002 203 MobiDBLite consensus disorder prediction 84 203 - -
Vium2303g00002 203 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 8 148 - -
Vium2303g00002 203 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 17 80 IPR003958 -
Vium2303g00002 203 Gene3D Histone, subunit A 2 95 IPR009072 GO:0046982
Vium2303g00002 203 MobiDBLite consensus disorder prediction 132 193 - -
Vium2303g00002 203 FunFam Nuclear factor Y, subunit C13 4 95 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2303g00002 7 136 CCAAT-HAP5 Transcription Factor Family AT5G43250 61.538 1.11e-46 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Vium2303g00002 CBFD_NFYB_HMF 6.5e-19 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2303g00002 - - vun:114164970 307.375