Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2298g00004 ATGGAGAAGGACAAAGTCTTAGTCAAAAAGGAAGTGTTACTGAAGGCATCATCCACTCCCATCATCCAAATAGATCTAAACCATGACAGGGGAGTTTTTCAATCCTTCAACTTTTCTCCTTTTACTAGTTTTCTTTCCTTTGTTCCAAAAATATTTGCGCAACTTTTCACCTCCCTCTTTCCTTCTTTCCACTATTCCATAAACATTGTGAACACTCATGAGTTAACTTCTTTTACTATTACTTGTTTATATACATTGATTGGTCCACATAAATTCATTCACAATTTTAATGCGTTTTGCAGGTTGACATTTGATCCAGGAGGAGTTCTTTGTTTTATAACACGCAATAAGGTCACTAATCTCTATTTGTTGCAGGCTCAGAACAATGGTTCTGATCCAGCTCCTTTTTTATACTTCGTGAATCCTATGATCATTTTGTTCATCCTAATCATCGCCATTGCAATAACAAATGCTCACACTCAGTCTTTTGAGTGTCCCAACTTCAGTTCAACTTGTATAAAGCACCTTAAGCTAGAAGGGAGTGCTTCTACCTCAGGTTCTGCTATCCAACTCACAGAAGAGAACGCAATATCCCCAAGCAAATCGTTTGGGAGCGCAGGGCGAGTCACGTATGCTGAACGAATAAACCTTAGGGACAATAGTTCAAATGAACCAAGAGACTTCATTACCAACTTTTCCTTTGTTGTTTCCTCAAATCAGAGTATCTATGGAGATGGTTTGGCATTCTTCCTTGCAAGCCCAAATCTTCCATCCACAGATAAGTTACAGCTAAGAGGAGGAAGTCTTGGGGTTGGCCTAACGGATGGTAATCGTGAGCTCTTCTGGTTAGGTTATCGATTCCTGGCAGTGGAGTTTGACACTTTCAGAAACCCATGGGACCCAGTTGGTGCTCATGTAGGAATAAATATCAATGACATGGAGTCTAAAATTTTTGAGACATGGTGGATAGATATGACACATAGGAAGGTTTGTAACTGTAGTATTGTATACGATTCTAGGAACAGTATTTTGAATGTCTCTTACACTGGATACAAATTAAGCGATGGGAAAGTGAGAAAGACTACACAACATCTTTCATACTCTGTCGATATAAGGCAGGAATTACCAGACTCCGTTGTTGTTGGCATATCAGCTGCAACTGGAAGATATTCTGAACAGCATGCCTTGCTCTCATGGTCGTTTAGCATCACCCCACCAAGTACGGACGATAAAGAAAAGGAAGGGAAGCCTGTCATGATAACATTGAAGGGAATAGGAATTGGTGCTGTCTTGTTTTTGAGTTTGTTAGGAATGGTTGAGATTTCATTGAGGATGATTGCCAAGAGAAAGGAAGTAGGTCACACTTCAAAGGCCACTTCTGATCCAAAGATGGAAGATAAATTACAAATGAGCACTGGACCCAAGAAGATTAGCTATCATGAATTGGAAACTGCAACCAACAACTTTGATGAGACGAATAAGCTTGGGCATGGAGGGTTTGGTGGTGTTTATAAAGGCTATTTCAAAGACTCCAACACCTATGCTGCTATAAAGAGGATATCAGCAGATTCTAAGCAGGGTGTAGAACAATACACTGCAGAAGTGACGATTATTAGCCAATTGAGGCACAGGAATTTGGTGAAACTCACTGGTTGGTGCCACAAGAAGAAAGATTTTCTCTTGATATACGAGTACATGGAAAATGGCAGCTTAGACTCTCAACTTTTTCGGGGAGAAAGTATATTACCCTTGGAAGTGAGGTACAACATAGCGTTGGGCTTGGCCTCAGCATTGCTTTACCTACAAGAAGAATGGGAGAAATGTGTGCTTCATAGGGACATCAAATCAAGCAACATAATGTTGGACTCCAACTTCAATCCCAAGCTTGGTGACTTTGGCCTAGCTAGGTTGGTGGATCATGATAAAGGGTCAGAAACCACAGACGTGGCTGGGACCATGGGTTACTTAGCTCCTGAGTACATGAACACAGGCCAGGCTCGAAAAGAGTCAGATATATTCAGTTTTGGGGTTGTTGTGTTGGAGATAGCCACTGGAAGAAAAGCCATTCACCACAAACACATGGAGGGTGAGGTATCAGTGGTTGAGTGGGTGTGGAAGCTATACGAATTGGGAAATCTGCTTGCAGCAGCAGATGAAAACCTACTTGGGGAATTTGATGTGAAGCAAATGGAATGTTTACTGGTAGTTGGTCTTTGGTGTGCTAATCCAGATTCAGCATCCAGACCTGCAATAAGGCAAGTGATTAACGTCCTTAACTCTGAATCTTCTTTACCAATTCTTCCACAGCAGATCCCAGTTTCATGA 2325 0.4129 MEKDKVLVKKEVLLKASSTPIIQIDLNHDRGVFQSFNFSPFTSFLSFVPKIFAQLFTSLFPSFHYSINIVNTHELTSFTITCLYTLIGPHKFIHNFNAFCRLTFDPGGVLCFITRNKVTNLYLLQAQNNGSDPAPFLYFVNPMIILFILIIAIAITNAHTQSFECPNFSSTCIKHLKLEGSASTSGSAIQLTEENAISPSKSFGSAGRVTYAERINLRDNSSNEPRDFITNFSFVVSSNQSIYGDGLAFFLASPNLPSTDKLQLRGGSLGVGLTDGNRELFWLGYRFLAVEFDTFRNPWDPVGAHVGININDMESKIFETWWIDMTHRKVCNCSIVYDSRNSILNVSYTGYKLSDGKVRKTTQHLSYSVDIRQELPDSVVVGISAATGRYSEQHALLSWSFSITPPSTDDKEKEGKPVMITLKGIGIGAVLFLSLLGMVEISLRMIAKRKEVGHTSKATSDPKMEDKLQMSTGPKKISYHELETATNNFDETNKLGHGGFGGVYKGYFKDSNTYAAIKRISADSKQGVEQYTAEVTIISQLRHRNLVKLTGWCHKKKDFLLIYEYMENGSLDSQLFRGESILPLEVRYNIALGLASALLYLQEEWEKCVLHRDIKSSNIMLDSNFNPKLGDFGLARLVDHDKGSETTDVAGTMGYLAPEYMNTGQARKESDIFSFGVVVLEIATGRKAIHHKHMEGEVSVVEWVWKLYELGNLLAAADENLLGEFDVKQMECLLVVGLWCANPDSASRPAIRQVINVLNSESSLPILPQQIPVS 774
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2298g00004 774 Gene3D - 158 423 - -
Vium2298g00004 774 Gene3D Phosphorylase Kinase; domain 1 474 565 - -
Vium2298g00004 774 SUPERFAMILY Protein kinase-like (PK-like) 472 764 IPR011009 -
Vium2298g00004 774 ProSiteProfiles Protein kinase domain profile. 489 767 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2298g00004 774 Gene3D Transferase(Phosphotransferase) domain 1 566 773 - -
Vium2298g00004 774 Pfam Protein kinase domain 490 755 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2298g00004 774 FunFam Lectin-domain containing receptor kinase A4.3 566 774 - -
Vium2298g00004 774 PANTHER - 188 760 - -
Vium2298g00004 774 ProSitePatterns Legume lectins beta-chain signature. 288 294 IPR019825 -
Vium2298g00004 774 SMART serkin_6 489 763 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2298g00004 774 ProSitePatterns Protein kinases ATP-binding region signature. 495 518 IPR017441 GO:0005524
Vium2298g00004 774 CDD STKc_IRAK 495 759 - -
Vium2298g00004 774 CDD lectin_legume_LecRK_Arcelin_ConA 162 404 IPR001220 GO:0030246
Vium2298g00004 774 ProSitePatterns Serine/Threonine protein kinases active-site signature. 609 621 IPR008271 GO:0004672|GO:0006468
Vium2298g00004 774 Pfam Legume lectin domain 161 413 IPR001220 GO:0030246
Vium2298g00004 774 SUPERFAMILY Concanavalin A-like lectins/glucanases 159 408 IPR013320 -
Vium2298g00004 774 FunFam L-type lectin-domain containing receptor kinase IX.1 474 565 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2298g00004 Vium-Chr2298 41728 50702 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2298g00004 144 774 Receptor kinase-like Gene Family AT5G10530 43.634 6.52e-163 484
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Vium2298g00004 Pkinase 2.8e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2298g00004 - - vum:124829843 1521.14