Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2298g00003 ATGGCAGGTGGTGATTGGCGTTTTGGTCTTTATGCAATCACTCTGGGGTTTTGTTATGCAAGAGGAACCTTTGTGTTCCTCTTGATAATCCCTCTTGAAAAGGCTCATTCACAACCATTTTCTTTTGAATACAAGTTCAGAAACGCTGCGGACGTAGAAAAGCTAAACCTTGAAGGAAATGTTTCTGTTTCAAATTCTGGCATCCACCTTGCAGTGGACTCAAACCATGGAGGAACTGGGAGTGTTGGGCGAGTAACAAGTCCCCAGCTTATCAAACTATGGGACAAGACATCGGAGGAACAAGGAAGCTTCGTTACCCAGTTTTCCTTTATGATCATCCCAAACAAGAGTTCTCGTGGAGACGGTTTTGCTTTCTTTATAGCAAACCCTAACCTCCTAAAGGTGAATGCAACGGATGAAATAAAGCGTGGAGGCCTTGGCATTGGTCTGGTGAATGACTCAGCACCTCGCTCAACCAGATTTAATGATTATCGATACGTGGCTGTGGAGTTTGACACTTTCTCAAACGATTGGGACCCTCGGGACCCACATGTTGGTGTGAATGTAAACTCTATGCGCTCTGAGGTAGTGGAGAATTGGAGAACAGATACTACTTCAAGAGGCCCTTATAAGTGTACCATTGAGTACCACTCCCGAGATCATTGGCTGACCATTTCTTTCACTGGAATCATGCCCAATGGAAAGCGAGTAACACAGCACCTTCTTTACCACATTGATTTGGGAAACTACTTAGACGAGAGGGTTGTTGTAGGTATATCAGCTGCAACAGGAGATGGATTTGATCAGTATACCTTGCTGGAATGGTCATTTAGTGAAATAACAATTAATGATAAGAAAGAGTTCGACAAGACAATGTTGTGGGAGGGAATAGGATTTGGTTTAGGTGGGGCTACGAGTTTCTTCGTGTTGCTCCTCCTTGTATTGAGGAAGAGGGGCGAGAAAGAAAAGGAAGAAGCCACTTCAGAAACCTCTTCGGATTTGAAAATGGATGATGCGTTCAAAATGGGCACTGGACCTAAGGAGATCAGATACGAGGTTTTGGTATCTGCGACAAACAACTTTAAAGAGAGACACAAGCTGAGGCAATGTCTTTACAAAGGTTATTTCAAAGACATAAACACTTATGCTGCAATACAGAGAATATCAGCTGGTTCATCACATGGTGTGAAGGAATATGCAGCGGAAGCAAGGATCATTAGCCAATTGAGGCACAGGAATTTGGTGAAACTCATCGGTTGGTGCCACAAGAAGAATCATCTCTTTCTGATATATGACTACATGCCAAATGGCAGCTTGTATTCTCATCTTTTTCATGGGGAGAGTATCTTATCGTGGCATTTGAGGTACAACATAGCTCTAGGCTTGGCCTCAGCATTGTTTTACCTACAAGAAGAGTTTGAAAAATGTGTGTTTCATAGAGACATCAAATCAAGCAACATAATGTTGGACTCTAATTTCAGTGCTAAGCTTGGGAATTTTGGCCTGTCAAGGCTTGAGGGTCGTAAGAAAGGGTCAAAAACAACAGTTATGGCTGGAACAACGGGTTACCTTGACCCAGAATATATTATCACAGGCAAGGCTAGAAAGGAATCTGATATGTTCAGCTTTGGGGTTGTTTTGTTGGAGGTAGCAAGTGGAAGAAAAGCCATTGATCAAGAAGAGAAAGAGGGTCAACCTCAAGTATCACTAGTTGAGTGGGTGTGGGAGCTCTATAGACTTAGAAATCTCCTTGCAGCAGCAGATCCAAACCTGAATGGGGAATTTGATGTGCAGCAAATGGAATGCTTGCTTGTTGCTGGTATTTGGTGTGCTAATTCAGATAGCAAGACAAGGCCCTCTATAAGGCAAGTGATTAAGGTGCTTAACTTTGAAGCTCCTTTTCCTGTTCTCCATCACCACCTATCTCCCTCCAACAACAACAGATGA 1947 0.4304 MAGGDWRFGLYAITLGFCYARGTFVFLLIIPLEKAHSQPFSFEYKFRNAADVEKLNLEGNVSVSNSGIHLAVDSNHGGTGSVGRVTSPQLIKLWDKTSEEQGSFVTQFSFMIIPNKSSRGDGFAFFIANPNLLKVNATDEIKRGGLGIGLVNDSAPRSTRFNDYRYVAVEFDTFSNDWDPRDPHVGVNVNSMRSEVVENWRTDTTSRGPYKCTIEYHSRDHWLTISFTGIMPNGKRVTQHLLYHIDLGNYLDERVVVGISAATGDGFDQYTLLEWSFSEITINDKKEFDKTMLWEGIGFGLGGATSFFVLLLLVLRKRGEKEKEEATSETSSDLKMDDAFKMGTGPKEIRYEVLVSATNNFKERHKLRQCLYKGYFKDINTYAAIQRISAGSSHGVKEYAAEARIISQLRHRNLVKLIGWCHKKNHLFLIYDYMPNGSLYSHLFHGESILSWHLRYNIALGLASALFYLQEEFEKCVFHRDIKSSNIMLDSNFSAKLGNFGLSRLEGRKKGSKTTVMAGTTGYLDPEYIITGKARKESDMFSFGVVLLEVASGRKAIDQEEKEGQPQVSLVEWVWELYRLRNLLAAADPNLNGEFDVQQMECLLVAGIWCANSDSKTRPSIRQVIKVLNFEAPFPVLHHHLSPSNNNR 648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2298g00003 648 SUPERFAMILY Concanavalin A-like lectins/glucanases 41 279 IPR013320 -
Vium2298g00003 648 Gene3D - 38 294 - -
Vium2298g00003 648 ProSitePatterns Legume lectins beta-chain signature. 167 173 IPR019825 -
Vium2298g00003 648 Pfam Legume lectin domain 40 290 IPR001220 GO:0030246
Vium2298g00003 648 ProSiteProfiles Protein kinase domain profile. 336 641 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2298g00003 648 CDD lectin_legume_LecRK_Arcelin_ConA 40 278 IPR001220 GO:0030246
Vium2298g00003 648 Pfam Protein kinase domain 372 626 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2298g00003 648 SUPERFAMILY Protein kinase-like (PK-like) 346 632 IPR011009 -
Vium2298g00003 648 FunFam Lectin-domain containing receptor kinase A4.3 434 646 - -
Vium2298g00003 648 Gene3D Transferase(Phosphotransferase) domain 1 434 641 - -
Vium2298g00003 648 PANTHER - 64 631 - -
Vium2298g00003 648 SMART serkin_6 361 634 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2298g00003 648 Gene3D Phosphorylase Kinase; domain 1 346 433 - -
Vium2298g00003 648 ProSitePatterns Serine/Threonine protein kinases active-site signature. 477 489 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2298g00003 Vium-Chr2298 33038 35527 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2298g00003 24 637 Receptor kinase-like Gene Family AT5G10530 40.446 9.35e-145 434
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Vium2298g00003 Pkinase 7.3e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2298g00003 - - cam:101492002 635.18