LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vium2298g00002	ATGGCAGTATCTTGCTACTGTAAGAAAAGTTATGTACGTGCTTGTTTAACAGTAACGCTCTTGCTTCTTATAACACCTCATGCAGCTTCATTGGAATTCGACTATCAGAGCTTTGGTGACACCGGAAACTTCTTCAATACTTCGGGAGATGTTAAACCTCAACAAGGAGTGCTCAAACTCACCAAAAATGAAACATTCAGTTATGGTAGAGTCATATATCCCAAACTATTGCATCTTTGGGACATAAACTCAGGGAAAGTCACGGATTTCACTACCCATTTCTCCTTTACCATCAGCGCCTTAAATAAAAAACATGCAGATGGTATCGCCTTCTTTCTGGCACATCCGGGCTTTCCATCGCTTTCCCCAAGAGATGGAGCTGGTATTGGTCTTGCTAGCCGTGATCAACTCAGAAATCAAAACTACAAAGTGGATCATCCATTTGTGGCAGTGGAATTTGATACCTTCGTTAATGAGTGGGATCCTCAGTCGTATCCCCATGTGGGTATCGATATCAATTCAATCGTATCTTCTGCAACTGCAGAGTGGTTCACCAGCCAGCCTGAGAGGGGATACGAGGCTGATATTAGTTTCGATTCCAGTTCAAACATATTAAGTGTCACCTTTACTGGGTACAAGGCGGACGTCGTAGTTCAAGGGAACTTATCCTCTGTGGTCAATCTGAAAGATGTCTTACCTGATTGGGTTGAATTTGGCTTTTCTGCAGCAACAGGAGATTATTACGACGAATATGCTCTTAGCTCATGGTCCTTCAACTCTAGTTTTCACATGGAAGCACATAAGGGTGGAAGCAAAAGAGGGCTGGTGATAGGGCTGAGCCTTGGACTTGGTGCAGGTATTTTAGTTGTTATTTTGGGGGTAACTTTTCTTGTGAGATGGATGCTGAGGACTACAGGTATGGAAGACGCCTCGCTTTTTGACCATGCCATGGACAATGATTTCGAAAAAGTCTCTCTACCCAAGAAGTTTTCCTTTGAAGAACTGGCCAGAGCAACTAATAACTTCGCTAGAGAAAACAAAATAGGACAGGGAGGTTTTGGGGCCGTCTACAGGGGATTTATTAAAGAGTTGAACACCGATGTTGCCGTCAAGAAGGTATCTCGTGAATCTACACAAGGGGTGAAAGAGTACATATCTGAAGTAAAGATCTTTGGTCAACTGAGACATAAGAATTTGGTTCAACTCTTTGGGTGGTGCCATGAGCATGAGGACCTGCTGCTGATTTATGAGTTCATGGAAAATGGAAGCTTGGATTCTTATCTGTTCAAGGGAAAAGGCCTGCTTACATGGAATGTGAGATATAATATTGCGAGAGGTTTGGCTTCAGCATTGTTATACCTGCATGAAGAGTGGGAAGAATGTGTGCTTCATAGAGACATAAAATCCAGCAATGTTATGTTGGATTCCAATTTTAATGCAAAGCTTGGAGATTTTGGGTTAGCCAGACTAATGGATCATGAGATAGGATCAAAAACAACTGTTTTAGCAGGAACAATTGGGTATTTGCCTCCTGAAGCTATCACAAGAGGCAAGGCTAGTAGGGAGTCCGATGTGTACAGCTTTGGAGTTGCTGCTTTGGAGATAGCCTGTGGTAGAAAGGCTATTGAAGCTAATATGGTTGAAGATATTTATTTGGTAGATTGGGTTTGGAAACTCTATGGCATGGGTGAACTCCTCAAAGCCTCTGATCCAAGCTTATATAGACACTTTGATGAGAAGGAAATGGAGACTTTACTGATAGTTGGCCTTTGGTGCACTCACACAGATTACCTTCAGAGGCCTACTATGAGGCAAGCAGTTCAAGTGCTTAGTTTTGAAGTGCCAATGCCCACACTCACACCACGGGTGCCATTCTCTGACAATAACACATCATTCAGCTCTATGGACTCTATGACTCCTGCTTTTTCAAATAACCACTTCACAGTCTAG	1950	0.4272	MAVSCYCKKSYVRACLTVTLLLLITPHAASLEFDYQSFGDTGNFFNTSGDVKPQQGVLKLTKNETFSYGRVIYPKLLHLWDINSGKVTDFTTHFSFTISALNKKHADGIAFFLAHPGFPSLSPRDGAGIGLASRDQLRNQNYKVDHPFVAVEFDTFVNEWDPQSYPHVGIDINSIVSSATAEWFTSQPERGYEADISFDSSSNILSVTFTGYKADVVVQGNLSSVVNLKDVLPDWVEFGFSAATGDYYDEYALSSWSFNSSFHMEAHKGGSKRGLVIGLSLGLGAGILVVILGVTFLVRWMLRTTGMEDASLFDHAMDNDFEKVSLPKKFSFEELARATNNFARENKIGQGGFGAVYRGFIKELNTDVAVKKVSRESTQGVKEYISEVKIFGQLRHKNLVQLFGWCHEHEDLLLIYEFMENGSLDSYLFKGKGLLTWNVRYNIARGLASALLYLHEEWEECVLHRDIKSSNVMLDSNFNAKLGDFGLARLMDHEIGSKTTVLAGTIGYLPPEAITRGKASRESDVYSFGVAALEIACGRKAIEANMVEDIYLVDWVWKLYGMGELLKASDPSLYRHFDEKEMETLLIVGLWCTHTDYLQRPTMRQAVQVLSFEVPMPTLTPRVPFSDNNTSFSSMDSMTPAFSNNHFTV	649

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vium2298g00002	649	ProSiteProfiles	Protein kinase domain profile.	342	619	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vium2298g00002	649	Gene3D	Transferase(Phosphotransferase) domain 1	419	628	-	-
	Vium2298g00002	649	CDD	lectin_legume_LecRK_Arcelin_ConA	31	262	IPR001220	GO:0030246
	Vium2298g00002	649	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	462	474	IPR008271	GO:0004672\|GO:0006468
	Vium2298g00002	649	SMART	serkin_6	342	612	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vium2298g00002	649	Gene3D	Phosphorylase Kinase; domain 1	327	418	-	-
	Vium2298g00002	649	Gene3D	-	29	273	-	-
	Vium2298g00002	649	ProSitePatterns	Legume lectins alpha-chain signature.	232	241	IPR000985	-
	Vium2298g00002	649	ProSitePatterns	Protein kinases ATP-binding region signature.	348	372	IPR017441	GO:0005524
	Vium2298g00002	649	ProSitePatterns	Legume lectins beta-chain signature.	149	155	IPR019825	-
	Vium2298g00002	649	SUPERFAMILY	Concanavalin A-like lectins/glucanases	29	263	IPR013320	-
	Vium2298g00002	649	FunFam	Lectin-domain containing receptor kinase A4.3	419	629	-	-
	Vium2298g00002	649	CDD	STKc_IRAK	348	610	-	-
	Vium2298g00002	649	FunFam	L-type lectin-domain containing receptor kinase IX.1	327	418	-	-
	Vium2298g00002	649	SUPERFAMILY	Protein kinase-like (PK-like)	326	630	IPR011009	-
	Vium2298g00002	649	Pfam	Protein kinase domain	343	608	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vium2298g00002	649	PANTHER	-	50	614	-	-
	Vium2298g00002	649	Pfam	Legume lectin domain	30	265	IPR001220	GO:0030246

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vium2298g00002	Vium-Chr2298	8136	10162	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vium2298g00002	21	626	Receptor kinase-like Gene Family	AT5G10530	45.411	1.51e-170	500

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_L-LEC	Vium2298g00002		Pkinase	4.3e-49	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vium2298g00002	-		-	var:108318726	1267.68