Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2297g00003 ATGGTTGGCAAAATTCGCTTATTGCTTCTTTCACTGTTTTTCTTCTTAATCTCGATCCACGCCAAGCTTGAACTCTACCCCTCAGACTTCAAGGCACTCTTGGCTCTGCGAAAGGATTTCGGAGTCAACGGTCAACTGGACCTAAATGAAGCATGTTACACGGAGGGTGTGTTCTGCGAGCGAAGGCTCTCCACCAAGGAAACCTACGTCCTCCGAATAACCAGGTTGGTCTTCAAATCAAAGCATCTCAAAGGTGTCTTGTCCCCCGCAATAGGACGCCTCACCGAGCTCAAACAACTCCTTCTCTCCCACAACCAACTCGTTGACCGCCTCCCTCCCCAAATCGTTGACTGCCGTAAGCTCGAAATCCTCGACCTTTCCAACAACCTCTTCTCCGGGGAGGTCCCCTCCGAACTCTCCTCTCTCACGCGCCTTCGCGCGTTGGACATATCCTCCAACCAATTCTCCGGCAACCTCAACTTCCTCAAGTACTTCCCCAACCTCGAAACCCTCTCCGTCGCCGACAACCTCTTCACCGGAAGGGTGCCTTCTTCCGTCCGCTCCTTCCGCAACCTCCGCCAATTCAACTTCTCCGGCAACAGCTTCCTCGAACCCTCTCTCCACTCCTCATCAGACCCCGTTCTCTCGAGACGTTTCCTCTTGGACGGTGCGGATGCACCTTCTCCTCCGCCTGCCTCAAGCAAGAGAAACTCCCAAGCCTCTAATGTTTCCCCTGCATCGGCACCTGGTCCTTCACCTAACCATCATAAACACAAGCACACTAAGAGAAAACTCCTGGGGTGGATTCTCGGGTTTTTGGCAGGGGCACTGGCTGGAACCTTATCAGGGTTCGTGTTTTCTCTGTTGTTCAAACTGGCTTTGGCGTTGATCAAAGGAAGAGGAAAGAGAGCGGGTCCTGATATTTTTAGTCCCTTGATTAAGAAAGCAGAGGATTTGGCCTTCTTGGAGAAGGAAGACGGACTCGCTTCGATGGAAGTCATTGGACGCGGTGGCTGTGGAGAGGTTTACAAGGCTGAGTTACCAGGAAGCAATGGCAAAATGATTGCTATAAAGAAAGTTATTCAACCTCCCAAAGATGCTGCTGAATTAGCAGAGGAAGATAGCAAGGCTATGCATAAGAAAATGAGGCAAATTCGGTCTGAGATTAACACTGTGGGACAAATTAGACACCGAAACCTTCTGCCTCTGTTAGCGCATGTTTCTAGGCCTGATTGCCACTACCTCGTTTATGAGTTCATGAAGAATGGTAGCTTGCTGGACTTGCTGCAAAAGGTTCAAAACGGTGAGGGAGAGCTGGATTGGTTTGCACGGCATAGAATCATGCTTGGTGTTGCTGCTGGACTTGAATACCTTCACATGAATCACAGCCCTCGCATCATTCACAGGGATCTCAAGCCTGGAAATATTCTTCTTGATGATGACATGGAAGCACGCATAGCTGATTTTGGACTCGCTAAGGCAATGCCGGATTACAAGACTCACGTAACCACCTCCAAAGTGGCTGGTACTGTGGGGTACATTGCTCCTGAGTATCACCAGATACTTAAGTTCACTGATAAGTGTGACATCTACAGCTTTGGAGTAATCCTTGGGGTGTTGGTGACTGGGAAGCTTCCTTCCGACGAGTTCTTTCAGCATACTGATGAGATTAGCTTGGTCAAGTGGTTGAGGAATATTTTAAGTTCTGAGAATCCCAAGAAGGCTATTGATCCGAAGCTGCTCGAAAATGGGTATGAGGAGCAGATGCTTCTGGTTGCGAAGATTGCATGCTTTTGCACCATGGATGATCCCAAAGAGAGGCCTAACGCAAAGGATGTTAGGTGCATGTTGTCTCAGATCAAACACTGA 1869 0.4917 MVGKIRLLLLSLFFFLISIHAKLELYPSDFKALLALRKDFGVNGQLDLNEACYTEGVFCERRLSTKETYVLRITRLVFKSKHLKGVLSPAIGRLTELKQLLLSHNQLVDRLPPQIVDCRKLEILDLSNNLFSGEVPSELSSLTRLRALDISSNQFSGNLNFLKYFPNLETLSVADNLFTGRVPSSVRSFRNLRQFNFSGNSFLEPSLHSSSDPVLSRRFLLDGADAPSPPPASSKRNSQASNVSPASAPGPSPNHHKHKHTKRKLLGWILGFLAGALAGTLSGFVFSLLFKLALALIKGRGKRAGPDIFSPLIKKAEDLAFLEKEDGLASMEVIGRGGCGEVYKAELPGSNGKMIAIKKVIQPPKDAAELAEEDSKAMHKKMRQIRSEINTVGQIRHRNLLPLLAHVSRPDCHYLVYEFMKNGSLLDLLQKVQNGEGELDWFARHRIMLGVAAGLEYLHMNHSPRIIHRDLKPGNILLDDDMEARIADFGLAKAMPDYKTHVTTSKVAGTVGYIAPEYHQILKFTDKCDIYSFGVILGVLVTGKLPSDEFFQHTDEISLVKWLRNILSSENPKKAIDPKLLENGYEEQMLLVAKIACFCTMDDPKERPNAKDVRCMLSQIKH 622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2297g00003 622 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 70 621 - -
Vium2297g00003 622 FunFam Leucine-rich repeat receptor-like serine/threonine/tyrosine-protein kinase SOBIR1 140 220 - -
Vium2297g00003 622 SUPERFAMILY L domain-like 70 206 - -
Vium2297g00003 622 Gene3D Phosphorylase Kinase; domain 1 317 419 - -
Vium2297g00003 622 MobiDBLite consensus disorder prediction 231 249 - -
Vium2297g00003 622 Pfam Leucine rich repeat 96 155 IPR001611 GO:0005515
Vium2297g00003 622 FunFam leucine-rich repeat receptor-like serine/threonine/tyrosine-protein kinase SOBIR1 315 419 - -
Vium2297g00003 622 ProSitePatterns Serine/Threonine protein kinases active-site signature. 466 478 IPR008271 GO:0004672|GO:0006468
Vium2297g00003 622 FunFam Leucine-rich repeat receptor-like protein kinase 420 622 - -
Vium2297g00003 622 Pfam Protein kinase domain 331 613 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2297g00003 622 Gene3D Ribonuclease Inhibitor 163 214 IPR032675 -
Vium2297g00003 622 Gene3D Ribonuclease Inhibitor 29 162 IPR032675 -
Vium2297g00003 622 ProSiteProfiles Protein kinase domain profile. 328 622 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2297g00003 622 MobiDBLite consensus disorder prediction 225 259 - -
Vium2297g00003 622 SUPERFAMILY Protein kinase-like (PK-like) 324 617 IPR011009 -
Vium2297g00003 622 Gene3D Transferase(Phosphotransferase) domain 1 420 622 - -
Vium2297g00003 622 SMART serkin_6 328 621 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2297g00003 Vium-Chr2297 32345 34341 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2297g00003 5 622 Receptor kinase-like Gene Family AT2G31880 62.934 0.0 797
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-2 Vium2297g00003 Pkinase 5.7e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2297g00003 - - gmx:100811980 981.474