Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2296g00008 ATGCTCCGCTACATTGGAGGAAGTGAATCTGATGGACATTTCTCTGTGATAAACGAGGCATGTTCAATGTTTGCACATACCAATCCCCTGCATTTGGATGTATTCAAGAGTGTTGCACGCTTTGAAGCAGAAGTGGTTGCAATGACAGCGGCACTTCTTGGAAGTAAGGAAAATAGTTCTGTAGGACAAATATGTGGCAACATGACATCAGGTGGGACTGAAAGTATACTATTATCTGTTAAAACATCTCGTGACTATATGAAATCTAAAAAAGGAATTACAAGACCTGAAATGATTATTCCCTTGTCTGGACACTCAGCATATGACAAGGCTGCACAGTATTTTAATATCAAACTATGGCGTGTACCAGTTGACAAGAATTTTCAAGCTGATGTGAAATCGATTCGACGCCATATTAACAAAAATACCATCCTGATTGTTGGATCTGCTCCTGGGTTTCCTCATGGAATAATTGACCCCATCGAAGAACTTGGTCGTCTGGCATCAAGCTTTGGTATTTGTTTCCATGTGGATCTTTGCCTTGGTGGCTTTGTATTACCATTTGCTCGTGAGCTTGGGTACCCCATTCCACCTTTTGATTTCTCTGTTAAAGGAGTTTCTTCAATATCAGTGGATGTACATAAATATGGTTTAGCTCCCAAAGGAACAAGTATAGTTCTTTATAGAAACCATGAAATCAGAAAGCATCAATTTGTTGCCGTTACCGAGTGGTCTGGTGGGTTGTATGTGTCTCCAACCACAGCTGGAAGCAGGCCTGGAAGTCTAATTGCGGGTGCGTGGGCAGCAATGATTTCTCTAGGGAAAGAAGGTTACTTGAAAAATACAAAAGCAATTATGGAAGGCTCAATAAGAATACAGAAAGGCATAGAGGAGATTGCTGAGTTGTTTATTGTTGGAAACCCTGACATGACAATCGTGGCTTTTGGTTCAGATGTTCTGGATATATTTGAAGTCAATGATGTTATGTCATCCAAAGGGTGGCATTTGAATGCATTACAGAGACCCAACAGCATCCATATATGTGTTACACTACAACATGTGCCAATTGTTGAAGACTTTCTGAATGATTTGAAGGAATCTGTGAAAACTGTGAAAGCAAATCCAGGTCCAATAAGTGGAGGCCTGGCACCTATATATGGCGCCGCAGGGAAGATGCCAGATAGAGGCATGGTCCAGGAATTGCTGGTAGATTATATGGACGGTACCTGCTAA 1233 0.4128 MLRYIGGSESDGHFSVINEACSMFAHTNPLHLDVFKSVARFEAEVVAMTAALLGSKENSSVGQICGNMTSGGTESILLSVKTSRDYMKSKKGITRPEMIIPLSGHSAYDKAAQYFNIKLWRVPVDKNFQADVKSIRRHINKNTILIVGSAPGFPHGIIDPIEELGRLASSFGICFHVDLCLGGFVLPFARELGYPIPPFDFSVKGVSSISVDVHKYGLAPKGTSIVLYRNHEIRKHQFVAVTEWSGGLYVSPTTAGSRPGSLIAGAWAAMISLGKEGYLKNTKAIMEGSIRIQKGIEEIAELFIVGNPDMTIVAFGSDVLDIFEVNDVMSSKGWHLNALQRPNSIHICVTLQHVPIVEDFLNDLKESVKTVKANPGPISGGLAPIYGAAGKMPDRGMVQELLVDYMDGTC 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2296g00008 410 SUPERFAMILY PLP-dependent transferases 13 374 IPR015424 -
Vium2296g00008 410 FunFam Sphingosine-1-phosphate lyase 1 261 373 - -
Vium2296g00008 410 Pfam Pyridoxal-dependent decarboxylase conserved domain 38 315 IPR002129 GO:0016830|GO:0019752|GO:0030170
Vium2296g00008 410 Gene3D - 374 407 - -
Vium2296g00008 410 PANTHER - 10 410 - -
Vium2296g00008 410 FunFam Sphingosine-1-phosphate lyase 1 371 409 - -
Vium2296g00008 410 FunFam sphingosine-1-phosphate lyase 1 10 274 - -
Vium2296g00008 410 Gene3D - 10 274 IPR015421 GO:0003824
Vium2296g00008 410 Gene3D Aspartate Aminotransferase, domain 1 275 373 IPR015422 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2296g00008 Vium-Chr2296 33098 38418 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2296g00008 26 368 Calmodulin-binding Proteins AT5G17330 25.556 2.30e-24 103