Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2296g00005 ATGGATTTTTCTTCTACTTCGATCTCTCACTTCAGAGTCTTTGCGAATTCGTTCCTCTCTCAATACGAACCGCTTGCTCTGCTTCTCGTTCCACTGCTTTCTCTCTTTCTCGCTCATTCGCTTCACTCCTTCTCACGCCTCCTATCCGAGAACGGACTCAAAGCCACCCTCCTAGGGTTTATCATGAACGCCGTCAAATTGGTTCCTGGCGTGAAGGGATACATAGATGCCGAAAAACAGAAGGTTGTGGATAAGTTGCAATCTGATAGCAAATCTAAAAGAGAAGGTTGGAATACTGAGTTGCCAAGCGCAGGATTAGGGACGTCTGTCCTTGATAAAATGAGAGAGGAAAAAAATAATGATCCGGTCTGGCAAGGCAAATGCTCCGGTACAGTCTACATTGGAGGAAGTGAATCTGATGGACATTTCTCTGTGATAAACGAGGCATGTTCAATGTTTGCACATACCAATCCCCTGCATTTGGATGTATTCAAGAGTGTTGCACGCTTTGAAGCAGAAGTGGTTGCAATGACAGCGGCACTTCTTGGAAGTAAGGAAAATAGTTCTGGAGGACAAATATGTGGCAACATGACATCAGGCGGGACTGAAAGTATACTATTAGCTGTGAAAACATCTCGTGACTATATGAAATCTAAAAAAGGAATTACAAGACCTGAAATGATTATTCCCTTGTCTGGACACTCAGCATATGACAAGGCTGCACAGTATTTTAATATCAAACTATGGCGTGTACCAGTTGACAAGAATTTTCAAGCGGATGTGAAAGCGATTCGACGCCATATTAACAAAAATACCATCCTGATTGTTGGATCTGCTCCTGGGTTTCCTCATGGAATAATTGACCCCATCGAAGAACTTGGTCGTCTGGCATCAAGCTTTGGTATTTGTTTCCATGTGGATCTTTGCCTTGGTGGCTTTGTATTACCATTTGCTCGTGAGCTTGGGTACCCCATTCCACCTTTTGATTTCTCTGTTAAAGGAGTTTCTTCAATATCAGTGGATGTACATAAATATGGTTTAGCTCCCAAAGGAACAAGTATAGTTCTTTATAGAAACCATGAAATCAGAAAGCATCAATTTGTTGCCGTTACCGAGTGGTCTGGTGGGTTGTATGTGTCTCCAACCACAGCTGGAAGCAGGCCTGGAAGTCTAATTGCGGGTGCGTGGGCAGCAATGATTTCTCTAGGGAAAGAAGGTTACTTGAAAAATACAAAAGCAATTATGGAAGGCTCAATAAGAATACAGAAAGGCATAGAGGAGATTGCTGAGTTGTTTATTGTTGGAAACCCTGACATGACAATCGTGGCTTTTGGTTCAGATGTTCTGGATATATTTGAAGTCAATGATGTTATGTCATCCAAAGGGTGGCATTTGAATGCATTACAGAGACCCAACAGCATCCATATATGTGTTACACTACAACATGTGCCAATTGTTGAAGACTTTCTGAATGATTTGAAGGAATCTGTGAAAACTGTGAAAGCAAATCCAGGTCCAATAAGTGGAGGCCTGGCACCTATATATGGCGCCGCAGGGAAGATGCCAGATAGAGGCATGGTCCAGGAATTGCTGGTAGATTATATGGACGGTACCTGCTAA 1620 0.4265 MDFSSTSISHFRVFANSFLSQYEPLALLLVPLLSLFLAHSLHSFSRLLSENGLKATLLGFIMNAVKLVPGVKGYIDAEKQKVVDKLQSDSKSKREGWNTELPSAGLGTSVLDKMREEKNNDPVWQGKCSGTVYIGGSESDGHFSVINEACSMFAHTNPLHLDVFKSVARFEAEVVAMTAALLGSKENSSGGQICGNMTSGGTESILLAVKTSRDYMKSKKGITRPEMIIPLSGHSAYDKAAQYFNIKLWRVPVDKNFQADVKAIRRHINKNTILIVGSAPGFPHGIIDPIEELGRLASSFGICFHVDLCLGGFVLPFARELGYPIPPFDFSVKGVSSISVDVHKYGLAPKGTSIVLYRNHEIRKHQFVAVTEWSGGLYVSPTTAGSRPGSLIAGAWAAMISLGKEGYLKNTKAIMEGSIRIQKGIEEIAELFIVGNPDMTIVAFGSDVLDIFEVNDVMSSKGWHLNALQRPNSIHICVTLQHVPIVEDFLNDLKESVKTVKANPGPISGGLAPIYGAAGKMPDRGMVQELLVDYMDGTC 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2296g00005 539 Gene3D - 136 403 IPR015421 GO:0003824
Vium2296g00005 539 FunFam sphingosine-1-phosphate lyase 1 139 403 - -
Vium2296g00005 539 Gene3D Aspartate Aminotransferase, domain 1 108 502 IPR015422 GO:0003824
Vium2296g00005 539 FunFam Sphingosine-1-phosphate lyase 1 500 538 - -
Vium2296g00005 539 Gene3D - 100 536 - -
Vium2296g00005 539 SUPERFAMILY PLP-dependent transferases 94 503 IPR015424 -
Vium2296g00005 539 FunFam Sphingosine-1-phosphate lyase 1 390 502 - -
Vium2296g00005 539 Pfam Pyridoxal-dependent decarboxylase conserved domain 167 444 IPR002129 GO:0016830|GO:0019752|GO:0030170
Vium2296g00005 539 PANTHER - 36 539 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2296g00005 Vium-Chr2296 27263 38418 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2296g00005 155 497 Calmodulin-binding Proteins AT5G17330 25.833 2.27e-24 104
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2296g00005 K01634 - gmx:100794395 978.393