Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2294g00001 ATGGCTGCAACGAACGGTGGGAAATTCGATGTGGGAGATGATACTCACATTTTTTCCCAGAAGGGAAGTGAAAGCGTTGATTGGGAGATTGAAAAGGGAAACGGCGTGGGTTCAAGCTCTCAGAGGCGTCAATGGAAGCCAGTTTTTGATGATACTTCCATTTCACACGATAGACCTCTGAAGAAAATCCGCAGCCCCGATCGCCGTAACACAAACCAATCTTCCTCCTCTTCTTCTTCTTCTTCTGTTACTTTTCAACCTTCTCCTCTCTCTATCCCTCCTTCATCCTCTTCAAGAATCGTGTTCCCTTTCGCCTTCAACGGTTCCCAATACCCAATGCAATTCCCGCACCAATTCGGAGCCATAAATTCACCCTTCCCTCACCCCTCTTTCCAAGACCCCCAACAGATGATATCATTCGGGTCCCAGCAACAAAACCTTCCCTTTCCACCAAACATGTCCCGAGATTCTTCTCTTCCACACCACCATCATCATCAACAGCATCCGCAGCAACTTCTTCAGCATTGGAGAGACGCTCTGAATCTAAGTCCCAGAGGAATGTTTACCCACTTGGGGCCAGATGGAAGGCCATTGTTTAGGCCTCCAACGCAGCCCATAAACACCACCAAGCTCTACAGAGGAGTGAGGCAACGCCATTGGGGTAAATGGGTCGCTGAAATTCGTCTTCCTCGAAACAGAACGCGTCTCTGGTTGGGCACATTTGACACGGCGGAGGACGCCGCCATGGCCTACGACCGCGAAGCCTTCAAACTCCGAGGAGAAAATGCCAGACTCAATTTCCCCGAAATGTTCCTCAACAAAGACAAAAACGAACAAGTTGAAGAAGAACCTTCTTCACCTGTTCAAGACCAGCATGAACAAAAACCTGTTCCTGTAGGCCGTGACATGCCAAGAGAAGAGTCTAACGAGAATGACTCAGGAATTGGATCGAGCGACGCTACTGTGAGTGATGAGGTTCATGCAGCTGCTGCTTCTGCAGAAGGAGGTGACGGGGTTTCTCAGGAACTTGTTTGGGGAGAAATGTCTGCATGGTTCAATGCTATTCCTGCAGCTTGGGGACCTGGTAGCCCTGTGTGGGATGATTTGGATCCCACCAATAATCTTCTTTACCAATCACACGTTCCTTTTTCAAATTCCAATCAGCAAGAGATGAATGATGCCTCTGATGATGCTCAGAGACATGAACACAACACGGGATCAGGTTACTTATGGAAGGATCAGGATTGA 1248 0.4848 MAATNGGKFDVGDDTHIFSQKGSESVDWEIEKGNGVGSSSQRRQWKPVFDDTSISHDRPLKKIRSPDRRNTNQSSSSSSSSSVTFQPSPLSIPPSSSSRIVFPFAFNGSQYPMQFPHQFGAINSPFPHPSFQDPQQMISFGSQQQNLPFPPNMSRDSSLPHHHHHQQHPQQLLQHWRDALNLSPRGMFTHLGPDGRPLFRPPTQPINTTKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEDAAMAYDREAFKLRGENARLNFPEMFLNKDKNEQVEEEPSSPVQDQHEQKPVPVGRDMPREESNENDSGIGSSDATVSDEVHAAAASAEGGDGVSQELVWGEMSAWFNAIPAAWGPGSPVWDDLDPTNNLLYQSHVPFSNSNQQEMNDASDDAQRHEHNTGSGYLWKDQD 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2294g00001 415 PRINTS Ethylene responsive element binding protein signature 234 250 IPR001471 GO:0003700|GO:0006355
Vium2294g00001 415 PRINTS Ethylene responsive element binding protein signature 212 223 IPR001471 GO:0003700|GO:0006355
Vium2294g00001 415 MobiDBLite consensus disorder prediction 382 415 - -
Vium2294g00001 415 Pfam AP2 domain 212 260 IPR001471 GO:0003700|GO:0006355
Vium2294g00001 415 MobiDBLite consensus disorder prediction 69 95 - -
Vium2294g00001 415 SMART rav1_2 211 274 IPR001471 GO:0003700|GO:0006355
Vium2294g00001 415 MobiDBLite consensus disorder prediction 49 68 - -
Vium2294g00001 415 Gene3D AP2/ERF domain 211 270 IPR036955 GO:0003700|GO:0006355
Vium2294g00001 415 MobiDBLite consensus disorder prediction 34 48 - -
Vium2294g00001 415 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 31 369 - -
Vium2294g00001 415 CDD AP2 210 269 IPR001471 GO:0003700|GO:0006355
Vium2294g00001 415 MobiDBLite consensus disorder prediction 1 95 - -
Vium2294g00001 415 MobiDBLite consensus disorder prediction 277 321 - -
Vium2294g00001 415 SUPERFAMILY DNA-binding domain 211 269 IPR016177 GO:0003677
Vium2294g00001 415 ProSiteProfiles AP2/ERF domain profile. 211 268 IPR001471 GO:0003700|GO:0006355
Vium2294g00001 415 MobiDBLite consensus disorder prediction 147 170 - -
Vium2294g00001 415 MobiDBLite consensus disorder prediction 277 309 - -
Vium2294g00001 415 MobiDBLite consensus disorder prediction 394 408 - -
Vium2294g00001 415 FunFam Ethylene-responsive transcription factor 2 210 269 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2294g00001 Vium-Chr2294 6813 9101 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2294g00001 51 385 AP2-EREBP Transcription Factor Family AT2G20880 44.706 2.52e-63 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vium2294g00001 AP2 2.7e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2294g00001 - - var:108333403 624.394