Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2293g00008 ATGAATGAACGTCGAAAAAACATGAATGTCAGGAGAAAGATCGGGAAGTATGAGGTGGGGCGAACTATTGGCGAAGGCACGTTCGCCAAGGTCAAGTTCGCCAGAAATTCTGAAACAGGGGAGAGCGTGGCCATTAAAACTATGGCTAAGACCACCATTCTCCAGCACAGAATGGTTGAGCAGATTAAAAGAGAGATATCGATTATGAAGATTGTCAGGCATCCTAATATAGTTAGATTGCACGAGGTTTTGGCTAGCCAGACCAAGATCTACATAATCCTTGAATTTGTGATGGGAGGGGAACTATATGACAAAATTGTTCAGCAGGGAAGGCTTTCTGAAAATGAATCTAGACGCTATTTTCAACAACTTATAGACGCTATTGATCATTGTCATAAAAAGGGTGTGTACCATAGAGACCTGAAGCCTGAAAACCTCCTTCTTGATGCTTTTGGAAATTTGAAAGTTTCTGACTTTGGATTGAGTGCATTGACTGAAAAGGGTGTTGGCCTTCTTCACACCACTTGTGGGACCCCAAATTATGTTGCCCCTGAGGTGATCGGAAATCGAGGATATAATGGTGCTGCAGCTGACGTTTGGTCATGTGGGGTCATCCTATATGTTCTACTAGCCGGATATCTTCCTTTTGAGGAGCCTGACCTTCCAACTTTGTACAGAAGGATCAATGCTGCAGAGTATGTCTGCCCATTCTGGTTTTCTGCTGAGACAAAGTCATTCATACATAAAATTCTAGATCCTAATCCAGAAACAAGGGTGAAAATTGAAGAAATAAGGAAAGTTCCATGGTTCCAGAAAAACTATTTTCCTGTCAAACTCAAGGAATGTGAGCAAGTAAATTTGGATGATGTTCGGGCTGTTTTTGATGATATTGAGGACCAATATGTTGCTGAAAAGTCAGAAATTACCGAGGGAGGTCCTTTCATAATGAATGCATTTGAGATGATTTCCTTATCACAAGGATTGAATCTTTCACCATTGTTTGATAGGCACCAGGATTATGTAAAGCGACAAACACGTTTTGTCTCCCGTAAACCAGCAAAAGTTATAATTTCTTCTGTTGAAGCTGTTGCAGAGTCAATGGGTCTTAAGGTCCATTCTCGCAATTACAAGGTGAGGCTAGAAGGTGTTTCTGTAAACAAGGTTGGGCAACTTGCAGTGGTCTTGGAGGTTTTTGAAGTCGCTCCATCCCTTTTCATGGTTGATATTCGGAAGGCAGCTGGGGACACTTTTGACTACCACAAGTTTTACAAGAGTTTTTGTTCCAAACTCGGAAACATTATTTGGAGACCGGCAGGGACCATTCCAAATTCTAACACGCTTAAGCAAATGACTATATAA 1359 0.4143 MNERRKNMNVRRKIGKYEVGRTIGEGTFAKVKFARNSETGESVAIKTMAKTTILQHRMVEQIKREISIMKIVRHPNIVRLHEVLASQTKIYIILEFVMGGELYDKIVQQGRLSENESRRYFQQLIDAIDHCHKKGVYHRDLKPENLLLDAFGNLKVSDFGLSALTEKGVGLLHTTCGTPNYVAPEVIGNRGYNGAAADVWSCGVILYVLLAGYLPFEEPDLPTLYRRINAAEYVCPFWFSAETKSFIHKILDPNPETRVKIEEIRKVPWFQKNYFPVKLKECEQVNLDDVRAVFDDIEDQYVAEKSEITEGGPFIMNAFEMISLSQGLNLSPLFDRHQDYVKRQTRFVSRKPAKVIISSVEAVAESMGLKVHSRNYKVRLEGVSVNKVGQLAVVLEVFEVAPSLFMVDIRKAAGDTFDYHKFYKSFCSKLGNIIWRPAGTIPNSNTLKQMTI 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2293g00008 452 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 8 421 - -
Vium2293g00008 452 ProSiteProfiles NAF domain profile. 311 335 IPR018451 GO:0007165
Vium2293g00008 452 Pfam NAF domain 315 372 IPR004041 GO:0007165
Vium2293g00008 452 ProSitePatterns Protein kinases ATP-binding region signature. 23 46 IPR017441 GO:0005524
Vium2293g00008 452 Gene3D Transferase(Phosphotransferase) domain 1 7 313 - -
Vium2293g00008 452 Gene3D Kinase associated domain 1, KA1 314 436 - -
Vium2293g00008 452 FunFam Non-specific serine/threonine protein kinase 8 96 - -
Vium2293g00008 452 FunFam Non-specific serine/threonine protein kinase 310 436 - -
Vium2293g00008 452 SUPERFAMILY Protein kinase-like (PK-like) 14 327 IPR011009 -
Vium2293g00008 452 CDD CIPK_C 317 430 - -
Vium2293g00008 452 FunFam Non-specific serine/threonine protein kinase 10 311 - -
Vium2293g00008 452 SMART serkin_6 17 270 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2293g00008 452 ProSitePatterns Serine/Threonine protein kinases active-site signature. 136 148 IPR008271 GO:0004672|GO:0006468
Vium2293g00008 452 ProSiteProfiles Protein kinase domain profile. 17 270 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2293g00008 452 Pfam Protein kinase domain 17 270 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2293g00008 Vium-Chr2293 105518 114648 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2293g00008 12 378 CBL-interacting serine-threonine protein kinases AT5G35410 73.025 0.0 579
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Vium2293g00008 Pkinase 5.4e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2293g00008 - - gmx:100811380 820.461