Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2293g00004 ATGACAACCTGCGGCATCGATGTTGCGCCCGAGCAACTCTGTTACATCCCCTGCAACTTTTGCAATATTGTTCTTGCGGTGAGTGTTCCATGCAGCAGCCTGTTTGACATTGTGACCGTTCGATGCGGGCACTGCACCAATCTATGGTCCGTGAACATGGCCGCCGCGTTTCAGTCACTGTCATGGCAAGATGTTCAGGGACCCGGGCACTGCAACCCAGAGTACAGGATTGACACTGGCTCCACCTCCAAATGCAACAACAGGATTGCAATGCGTCCACCCCCCACTATTGTAACTGAGGAAAGGGTTGTCAACAGGCCTCCCGAGAAGAGGCAGCGCGTACCTTCTGCTTATAATCAGTTTATAAAGGAAGAGATTCAGAGGATCAAAGCCAATAATCCTGATATCAGTCACAGAGAAGCTTTCAGTACAGCTGCCAAAAACTGGGCACATTTTCCCCATATTCACTTCGGGCTGATGCTGGACAGCAACAACCAAGCTAAGATGGAAAATGTTTCTGAGAAACATTTAATGTCAAGGGCTGCGCTAATGAATAAATGA 561 0.4866 MTTCGIDVAPEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQSLSWQDVQGPGHCNPEYRIDTGSTSKCNNRIAMRPPPTIVTEERVVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGLMLDSNNQAKMENVSEKHLMSRAALMNK 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2293g00004 186 CDD HMG-box_SF 113 149 - -
Vium2293g00004 186 PANTHER PROTEIN YABBY 6-RELATED 9 169 IPR006780 GO:0007275
Vium2293g00004 186 FunFam Axial regulator YABBY 104 176 - -
Vium2293g00004 186 SUPERFAMILY HMG-box 102 152 IPR036910 -
Vium2293g00004 186 Gene3D High mobility group box domain 99 178 IPR036910 -
Vium2293g00004 186 Pfam YABBY protein 9 159 IPR006780 GO:0007275
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2293g00004 Vium-Chr2293 54676 58468 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2293g00004 8 169 C2C2-YABBY Transcription Factor Family AT2G26580 76.543 2.89e-90 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Vium2293g00004 YABBY 5.1e-67 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2293g00004 K25796 - gmx:100804731 371.703