Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2291g00001 ATGACGGTTCCTCCCGAACAGAAGAGTGGACAACAAAGCTTGGAAAGAGACCGGACGGCTAGAAGACAAATTGTGGAGGAGTTTGGTGACTTAGCCCCAAATAACCGAAACAGAGAGATTCTCGACAAGAATTGTGGCAACAAAGAGATTATGGCACACGAAAAAATTGAAGCATATGAATCTAGAATATCATCGACTCAATCAAAAGAAATGTCCAATTCAGATTCATTGGCTCATGCTTTAGGAATCAAAGAGCATTGTGGACGCATTCGTGGTTTAGGTTTGGATCCTTGCCCATCTAAAGTCTTTGGAGTCCATGCTCGTTCTCATGGTGGATCATCTTCAACTTCTGCTTCTAATGTTGAATTACAAACTCAGGTTCCTCCCGAACAGAAGAGTGGACAACAAAGCTTGGAAAGAGACCGGACGGCTAGAAGACAAATTGTGGAGGAGTTTGGTGACTTAGCCCCAAATAACCGAAACAGAGAGATTCTCGACAAGAATTGTGGCAACAAAGAGATTATGGCACACGAAAAAATTGAAGCATATGAATCTAGAATATCATCGACTCAATCAAAAGAAATGTCCAATTCAGATTCATTGGCTCATGCTTTAGGAATCAAAGAGCATTGTGGACGCATTCGTGGTTTAGGTTTGGATCCTTGCCCATCTAAAGTCTTTGGAGTCCATGCTCGTTCTCATGGTGGATCATCTTCAACTTCTGCTTCTAATGTTGAATTACAAACTCAGACAAAGACGACAACCACGGCAGAGCAGCAACAACGGGGTTACTTTCAACAGCGGCAACGGAAACGGGCTTTTGCTGGTTCGGTGGAGCATGCAGGAACGACGTCGTGGAGGCAGGGGATGGTGAGAGGAGGTGGAGGAGGAGGAGGAGGGGAGATAGTGGAAGTTGAAGGGGGACACATTGTGCGGTCCACGGGGCGGAAGGATCGCCACAGCAAAGTGTGCACTGCCAAAGGGCCGCGCGACCGGCGGGTGAGGCTATCGGCCCACACCGCAATTCAATTCTACGACGTGCAGGATCGGTTGGGCTACGACCGGCCCAGTAAGGCCGTGGACTGGCTCATCAACAAAGCCAAGGACGCCATCGACCAACTCGCGCATCTCCCTCCCTGGAAACCCACCCTTCCGACAGCAAACCACCTAAACGACGACGAATCAGACAAAACAAACCCTAATAACCCGAACTCAACCACAAACACTAGCACAAACCCTGATGCTGAAATTCTGAACCAGTTCAACGAGAACCTTGAGAACGATGATGGTGGTGGAGGAGGAGGAGGAGGAGGAGGAGGTTCGAGTTATCTTCCCTTGGATAACGACGCTATAAGATCGTTCTTTCCCACAACGACGTCGTCGTTGATTCAGTTCCAAAGCTACCCACCGGATTTGCTTTCGAGGACGAGCAGCCAGGATTTGCGTCTCTCGCTTCAGTCCTTGCAGGACCCGATTATGCTCCACCATAACCAAAACGAGCACGTGCTTTTCGCTGGAGCCGGGTTTGATAATATGGGAGCGTGGAACAACAGTGGGAATGCTACTAATGATACTCATGGTGGTGGAGGTGGAGGAGGGTTCGTGGTTAACGCTCCCTCGCCTTTTCCGGGGCCGGCGACTGTTGCGCCGCCGGCGGTGGTTTTTGGCTATGGTAATGGGAATGGTCAAGGCCAGTATTTTTCTCAGAGGGGACCCCTTCAGTCCAGTAACACCCCGTCCGTTCGTGCGTGGATTGACGCGCCGTCGTTCGTGGCCGCCGCCGATCATTATCATCGGCATCACTACTTGTCACCGGCGGCTGCGGCGGCGTTGGTGTATCAGTCATCTCCTTCTTCGGCATTTGCGCCCGGGGGCTTCTCGGGATTCCGCGTGCCGGCACGAATTCAGGGTGAAGAGGAGCACGACGGCGTGTCCGATAAGCCGTCCTCTGCTTCCTCCGATTCTCGCCGCTGA 1974 0.5111 MTVPPEQKSGQQSLERDRTARRQIVEEFGDLAPNNRNREILDKNCGNKEIMAHEKIEAYESRISSTQSKEMSNSDSLAHALGIKEHCGRIRGLGLDPCPSKVFGVHARSHGGSSSTSASNVELQTQVPPEQKSGQQSLERDRTARRQIVEEFGDLAPNNRNREILDKNCGNKEIMAHEKIEAYESRISSTQSKEMSNSDSLAHALGIKEHCGRIRGLGLDPCPSKVFGVHARSHGGSSSTSASNVELQTQTKTTTTAEQQQRGYFQQRQRKRAFAGSVEHAGTTSWRQGMVRGGGGGGGGEIVEVEGGHIVRSTGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLINKAKDAIDQLAHLPPWKPTLPTANHLNDDESDKTNPNNPNSTTNTSTNPDAEILNQFNENLENDDGGGGGGGGGGGSSYLPLDNDAIRSFFPTTTSSLIQFQSYPPDLLSRTSSQDLRLSLQSLQDPIMLHHNQNEHVLFAGAGFDNMGAWNNSGNATNDTHGGGGGGGFVVNAPSPFPGPATVAPPAVVFGYGNGNGQGQYFSQRGPLQSSNTPSVRAWIDAPSFVAAADHYHRHHYLSPAAAAALVYQSSPSSAFAPGGFSGFRVPARIQGEEEHDGVSDKPSSASSDSRR 657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2291g00001 657 MobiDBLite consensus disorder prediction 233 267 - -
Vium2291g00001 657 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 233 574 IPR005333 GO:0003700
Vium2291g00001 657 Pfam TCP family transcription factor 315 399 IPR017887 -
Vium2291g00001 657 MobiDBLite consensus disorder prediction 632 657 - -
Vium2291g00001 657 MobiDBLite consensus disorder prediction 109 134 - -
Vium2291g00001 657 MobiDBLite consensus disorder prediction 230 282 - -
Vium2291g00001 657 ProSiteProfiles TCP domain profile. 316 374 IPR017887 -
Vium2291g00001 657 MobiDBLite consensus disorder prediction 397 426 - -
Vium2291g00001 657 MobiDBLite consensus disorder prediction 634 657 - -
Vium2291g00001 657 MobiDBLite consensus disorder prediction 377 443 - -
Vium2291g00001 657 MobiDBLite consensus disorder prediction 106 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2291g00001 Vium-Chr2291 1073 23819 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2291g00001 284 656 TCP Transcription Factor Family AT3G15030 45.682 2.30e-77 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Vium2291g00001 TCP 1.3e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2291g00001 - - vum:124829805 1154.04