Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2290g00009 ATGTTAGAACTGGAGAGAAAGAAGGAAGAGAGTTCAATTCTGTTGGGTGACAAAACTATTAGCTTTTGGGAACAGATGCAAGATCCATCTTCAAACCCTAATTCCAATTCCAATCCCAATCCTCACAATGCCAATGCTGCATCTCAGCTACCACGACCGCCGCCGTCAACAGCGGTCCCCGCCGCCGGCGCCTCCTCGTCCTCGATTTTCGCACGCTCCGGCGGGGCTCACCACCGGCGAGCTCACTCGGAGGTGAGTTTCCGGCTTCCGGACGACATGATGGACCTGTCGCCGTCGGATCCATTTGCCGGCGGGTCATCTACAGCGAGTATGGAGGAGATCGGATCCGAGGACGACTTGTTCTCGACGTACATTGACGTGGACAAGCTGGGAGGTGCAAACGGGTCGGGCGGTGCGGGAAACGGAGCGGATCCGACCGGAGAACGGGAGAAAAGTCCGGCGAGGGCGCGGCACCGGCACAGTAATTCCGTCGATGGCTCTTCATCTTTTGCCGAAATTATGGAAGCTAAGAAGGCTATGCCTCCTGATAAGTTAGCTGAGCTATGGACAGTTGATCCCAAGCGTGCTAAGAGAATACTTGCAAATCGGCAATCCGCTGCTCGATCTAAAGAGAGAAAAGCTCGCTATATACAAGAACTCGAGCGCAAGGTTCAAACACTTCAGACCGAAGCCACAACCCTTTCTGCTCAGTTGACATTATACCAGAGGGACACAACAGGCCTGAGTACTGAAAATACCGAGCTTAAGCTCCGTCTGCAAGCCATGGAGCAGCAAGCACAGCTTCGTGATGCTCTTAATGAAGCATTGAAAAAGGAAGTTGAGAGACTTAAAGTTGCTACTGGTGAGATGATGAGCCACACTGAATCCTTTAATTTGGGAATGCACCATATGCCGTTTACGGGATCAACTTTCAGTCCAATCCTGTCACAATCAGGTCCTTCTGGTCACCAGAACATCCAGTTGTCATCATTTGGTCACTCCCCATCAACAATGCCAACTCATCAACTGCATCAAACTAGTTCTCATACACTATCAGAAATATTGCAAAATGACCAGCTTGGTCGTTTCCAGGGCCTTGACATTAGTAGCAAAGGATCAACTCTGGTGAAGTCTGAAGGCCCCTCACTGTCTGCAAGTGAGAGTAGCACTACCTTTTGA 1179 0.5055 MLELERKKEESSILLGDKTISFWEQMQDPSSNPNSNSNPNPHNANAASQLPRPPPSTAVPAAGASSSSIFARSGGAHHRRAHSEVSFRLPDDMMDLSPSDPFAGGSSTASMEEIGSEDDLFSTYIDVDKLGGANGSGGAGNGADPTGEREKSPARARHRHSNSVDGSSSFAEIMEAKKAMPPDKLAELWTVDPKRAKRILANRQSAARSKERKARYIQELERKVQTLQTEATTLSAQLTLYQRDTTGLSTENTELKLRLQAMEQQAQLRDALNEALKKEVERLKVATGEMMSHTESFNLGMHHMPFTGSTFSPILSQSGPSGHQNIQLSSFGHSPSTMPTHQLHQTSSHTLSEILQNDQLGRFQGLDISSKGSTLVKSEGPSLSASESSTTF 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2290g00009 392 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 29 362 - -
Vium2290g00009 392 Pfam bZIP transcription factor 194 249 IPR004827 GO:0003700|GO:0006355
Vium2290g00009 392 MobiDBLite consensus disorder prediction 132 169 - -
Vium2290g00009 392 FunFam probable transcription factor PosF21 193 246 - -
Vium2290g00009 392 MobiDBLite consensus disorder prediction 23 52 - -
Vium2290g00009 392 Coils Coil 210 237 - -
Vium2290g00009 392 Gene3D - 193 245 - -
Vium2290g00009 392 MobiDBLite consensus disorder prediction 148 162 - -
Vium2290g00009 392 Coils Coil 258 289 - -
Vium2290g00009 392 SUPERFAMILY Leucine zipper domain 194 245 IPR046347 GO:0003700|GO:0006355
Vium2290g00009 392 MobiDBLite consensus disorder prediction 310 349 - -
Vium2290g00009 392 SMART brlzneu 190 254 IPR004827 GO:0003700|GO:0006355
Vium2290g00009 392 MobiDBLite consensus disorder prediction 1 112 - -
Vium2290g00009 392 MobiDBLite consensus disorder prediction 372 392 - -
Vium2290g00009 392 CDD bZIP_plant_RF2 195 244 IPR044759 GO:0003700|GO:0006355
Vium2290g00009 392 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 192 255 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2290g00009 Vium-Chr2290 75080 77950 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2290g00009 26 392 bZIP Transcription Factor Family AT2G40620 53.086 8.53e-106 315
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vium2290g00009 bZIP_1 6.4e-09 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2290g00009 - - vra:106763153 691.034