Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2290g00008 ATGGCAATCCGTAGATATTCAACTGCTGTCCTTCTTCTCATTTCTGTGTTTGCTGGAACGCAGTTGCAGGGTGCCACTGCTACCGATCATGGTTGGGAGGGTAGCCATGCTAGTTTCTATACTGGTTCTTCTAAGACCATGGGAGGAGCATGTGGTTACGGGGATGTGATTGCAGAGGGATACGGAAGTGATACTACAGCTCTAAGCACTGCTTTGTTCAACAATGGGTTCTCTTGTGGGGCATGTTTTGAAGTTAGGTGTGTTAATGACGCAAAATGGTGCAAACCTGGCACTGTTGTTGTTACTGTTACAAACTTCTGCCCTCCTTCACAACACTTCAACTTGGCAGAATCAGCCTTCCTCAAAATTGCTCGGTTCAGAGCTGGAATTGTACCTGTGCAATTTAGAAGAGTGCCTTGTGTGAAAAGGGGAGGAATAAGGTTCACAATTAATGGACACTCTTACTTCAACCTGGTTTTGATCACCAACGTAGCGGGTGCAGGGGATGTCAATGCAGTCTCCATCAAAGGGTCCAAAACAGGGTGGCAACCCATGCCAAGGAACTGGGGGCAAAATTGGCAGAGCAACTCCTACCTCAATGGACAGAGTCTCTCTTTTCAAGTCACCACCAGTGACCGTATAACTGTCACAAGCTACAACGTGGCACCGGCTAATTGGCAGTTTGGTCAGACCTTCGAGGGGCGTCAATTTTAG 714 0.4748 MAIRRYSTAVLLLISVFAGTQLQGATATDHGWEGSHASFYTGSSKTMGGACGYGDVIAEGYGSDTTALSTALFNNGFSCGACFEVRCVNDAKWCKPGTVVVTVTNFCPPSQHFNLAESAFLKIARFRAGIVPVQFRRVPCVKRGGIRFTINGHSYFNLVLITNVAGAGDVNAVSIKGSKTGWQPMPRNWGQNWQSNSYLNGQSLSFQVTTSDRITVTSYNVAPANWQFGQTFEGRQF 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2290g00008 237 FunFam Expansin 145 237 - -
Vium2290g00008 237 PRINTS Expansin/Lol pI family signature 31 46 IPR007118 GO:0005576
Vium2290g00008 237 PRINTS Expansin/Lol pI family signature 69 87 IPR007118 GO:0005576
Vium2290g00008 237 PRINTS Expansin/Lol pI family signature 220 234 IPR007118 GO:0005576
Vium2290g00008 237 PRINTS Expansin/Lol pI family signature 182 196 IPR007118 GO:0005576
Vium2290g00008 237 SUPERFAMILY PHL pollen allergen 142 234 IPR036749 -
Vium2290g00008 237 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 155 234 IPR007117 -
Vium2290g00008 237 CDD DPBB_EXPA_N 31 140 - -
Vium2290g00008 237 Gene3D - 145 237 IPR036749 -
Vium2290g00008 237 PANTHER EXPANSIN-A15 11 237 IPR002963 GO:0009664
Vium2290g00008 237 PRINTS Expansin signature 156 177 IPR002963 GO:0009664
Vium2290g00008 237 PRINTS Expansin signature 220 236 IPR002963 GO:0009664
Vium2290g00008 237 PRINTS Expansin signature 144 156 IPR002963 GO:0009664
Vium2290g00008 237 PRINTS Expansin signature 60 74 IPR002963 GO:0009664
Vium2290g00008 237 PRINTS Expansin signature 191 212 IPR002963 GO:0009664
Vium2290g00008 237 Pfam Lytic transglycolase 65 135 IPR009009 -
Vium2290g00008 237 SUPERFAMILY Barwin-like endoglucanases 31 163 IPR036908 -
Vium2290g00008 237 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 48 145 IPR007112 -
Vium2290g00008 237 Pfam Expansin C-terminal domain 146 223 IPR007117 -
Vium2290g00008 237 Gene3D - 17 140 IPR036908 -
Vium2290g00008 237 SMART dpbb_1 65 135 IPR007112 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2290g00008 Vium-Chr2290 34199 36485 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2290g00008 13 237 Expansin Gene Family AT2G40610 64.609 1.97e-112 321
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2290g00008 - K20628 gmx:100777044 372.474