LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vium2290g00008	ATGGCAATCCGTAGATATTCAACTGCTGTCCTTCTTCTCATTTCTGTGTTTGCTGGAACGCAGTTGCAGGGTGCCACTGCTACCGATCATGGTTGGGAGGGTAGCCATGCTAGTTTCTATACTGGTTCTTCTAAGACCATGGGAGGAGCATGTGGTTACGGGGATGTGATTGCAGAGGGATACGGAAGTGATACTACAGCTCTAAGCACTGCTTTGTTCAACAATGGGTTCTCTTGTGGGGCATGTTTTGAAGTTAGGTGTGTTAATGACGCAAAATGGTGCAAACCTGGCACTGTTGTTGTTACTGTTACAAACTTCTGCCCTCCTTCACAACACTTCAACTTGGCAGAATCAGCCTTCCTCAAAATTGCTCGGTTCAGAGCTGGAATTGTACCTGTGCAATTTAGAAGAGTGCCTTGTGTGAAAAGGGGAGGAATAAGGTTCACAATTAATGGACACTCTTACTTCAACCTGGTTTTGATCACCAACGTAGCGGGTGCAGGGGATGTCAATGCAGTCTCCATCAAAGGGTCCAAAACAGGGTGGCAACCCATGCCAAGGAACTGGGGGCAAAATTGGCAGAGCAACTCCTACCTCAATGGACAGAGTCTCTCTTTTCAAGTCACCACCAGTGACCGTATAACTGTCACAAGCTACAACGTGGCACCGGCTAATTGGCAGTTTGGTCAGACCTTCGAGGGGCGTCAATTTTAG	714	0.4748	MAIRRYSTAVLLLISVFAGTQLQGATATDHGWEGSHASFYTGSSKTMGGACGYGDVIAEGYGSDTTALSTALFNNGFSCGACFEVRCVNDAKWCKPGTVVVTVTNFCPPSQHFNLAESAFLKIARFRAGIVPVQFRRVPCVKRGGIRFTINGHSYFNLVLITNVAGAGDVNAVSIKGSKTGWQPMPRNWGQNWQSNSYLNGQSLSFQVTTSDRITVTSYNVAPANWQFGQTFEGRQF	237

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vium2290g00008	237	FunFam	Expansin	145	237	-	-
	Vium2290g00008	237	PRINTS	Expansin/Lol pI family signature	31	46	IPR007118	GO:0005576
	Vium2290g00008	237	PRINTS	Expansin/Lol pI family signature	69	87	IPR007118	GO:0005576
	Vium2290g00008	237	PRINTS	Expansin/Lol pI family signature	220	234	IPR007118	GO:0005576
	Vium2290g00008	237	PRINTS	Expansin/Lol pI family signature	182	196	IPR007118	GO:0005576
	Vium2290g00008	237	SUPERFAMILY	PHL pollen allergen	142	234	IPR036749	-
	Vium2290g00008	237	ProSiteProfiles	Expansin, Cellulose-binding-like domain profile.	155	234	IPR007117	-
	Vium2290g00008	237	CDD	DPBB_EXPA_N	31	140	-	-
	Vium2290g00008	237	Gene3D	-	145	237	IPR036749	-
	Vium2290g00008	237	PANTHER	EXPANSIN-A15	11	237	IPR002963	GO:0009664

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Vium2290g00008	Vium-Chr2290	34199	36485	Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vium2290g00008	13	237	Expansin Gene Family	AT2G40610	64.609	1.97e-112	321

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vium2290g00008	-		K20628	gmx:100777044	372.474

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