Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium228g00003 ATGGAGGGAAAGGAGCAAGATGTTTCATTGGGAGCGAACAAATTCTCAGAGAGGCAACCCATCGGGACTGCGGCTCAGAGCCAAGACGATGGAAAGGACTACCAAGAGCCTCCGTCGGCTCCACTATTCGAACCCTCCGAACTCGCTTCTTGGTCCTTCTACAGAGCTGGAATAGCCGAGTTTGTGGCTACTTTTCTTTTCCTCTACATAACTATCTTAACCGTCATGGGTGTCAATAGGTCCGATTCCAAGTGCGCAACCGTTGGCATTCAAGGCATTGCCTGGGCCTTCGGTGGTATGATCTTCGCTCTCGTTTACTGCACCGCTGGAATCTCAGGGGGACACATAAACCCGGCTGTGACATTCGGACTCTTCTTGGCGAGGAAATTGTCGTTGACTAGGGCACTGTTCTACATGGTGATGCAGGTTCTGGGTGCTATCGTTGGTGCTGGTGTGGTCAAAGGTTTCGAGGGAAAAACCTTCTTCGGGAAACACAACGGTGGTGCCAACTTCGTTGCCTCTGGTTACACCAAAGGTGATGGACTCGGTGCTGAGATTGTTGGTACCTTCGTTCTCGTCTACACTGTTTTCTCAGCCACTGACGCCAAGCGTAACGCTAGAGACTCACACGTTCCTGTGTGTGCCCTACTTTTATTATTCATGAAAAAAAATATATTAATTCATAAATATTTTACCATGTTGGTGGAATGA 711 0.4866 MEGKEQDVSLGANKFSERQPIGTAAQSQDDGKDYQEPPSAPLFEPSELASWSFYRAGIAEFVATFLFLYITILTVMGVNRSDSKCATVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYMVMQVLGAIVGAGVVKGFEGKTFFGKHNGGANFVASGYTKGDGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPVCALLLLFMKKNILIHKYFTMLVE 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium228g00003 236 MobiDBLite consensus disorder prediction 1 37 - -
Vium228g00003 236 Pfam Major intrinsic protein 47 222 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium228g00003 236 MobiDBLite consensus disorder prediction 19 33 - -
Vium228g00003 236 PRINTS Major intrinsic protein family signature 97 121 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium228g00003 236 PRINTS Major intrinsic protein family signature 55 74 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium228g00003 236 PRINTS Major intrinsic protein family signature 134 153 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium228g00003 236 PRINTS Major intrinsic protein family signature 184 202 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium228g00003 236 ProSitePatterns MIP family signature. 115 123 IPR022357 -
Vium228g00003 236 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 12 218 IPR034294 -
Vium228g00003 236 SUPERFAMILY Aquaporin-like 47 221 IPR023271 -
Vium228g00003 236 Gene3D Glycerol uptake facilitator protein. 40 227 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium228g00003 Vium-Chr228 51077 52021 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium228g00003 1 219 Major Intrinsic Protein MIP AT4G00430 80.822 3.76e-127 357
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium228g00003 K09872 - gmx:100791447 412.149