Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium228g00001 ATGGCGGTGAAACTGACAAAAGCGCAGAAGAAGATAGCCTACGATGCCAAACTGTGTCGGCTTCTGGATAACTACACCCAAATTCTGGTGGTGGCTGCGGACAACGTTGGATCCAACCAGCTTCAGAACATCCGACAGGGTCTACGTGGCGACTCCGTGGTGCTCATGGGAAAGAACACCATGATGAAACGCTCTGTCAAACTCCACGCTGAGAGCACCGGCAACAAGGCCTTCCTCAACCTTGTGCCTCTTCTAGTGGGAAATGTTGGGTTGATTTTCACCAAAGGTGACGTGAAGGAGGTTAGCGAAGTGGTTGCCAAGTACAAGGTGGGAGCTCCTGCTCGTGTTGGGTTGATTGCACCTATTGATGTTGTAGTTCCTCCGGGCAACACAGGGTTGGATCCCTCTCAGACTTCCTTTTTCCAGGTACTGAATATTCCTACAAAAATTAACAAGGGTACTGTGGAAATTATCACTCCTGTGGAACTGATTAGGAAGGGTGAGAAGGTTGGGTCTTCTGAAGCTGCATTGCTTTCGAAGCTTGCGATAAGGCCATTCTCGTATGGGCTTGTTGTGGTTTCTGTTTATGACAACGGTTCGGTGTTTAGTCCTGCGGTTCTTGACCTCACTGACGATGACCTCCTTAATATGTTTGCTGATGGTGTTTCCATGCTATCTTCACTGTCGTTGGCTATCTCCTACCCTACAATTGCAGCTGCACCACACATGTTCGTTAATTCCTATAAGAACGTCCTCGCTGTTGCAGTGGCCACAGAATATTCGTTCCCCCAGGCTAACGAGGTGAAGGAGTACCTGAAGGATCCTAGTAAATTTGCAGTAGCTGCTGCTGTTGCCGCACCTGCTACTGGTTCTGCTCCAGCTGCTGCCTCCAAGGAGGAGGAAAAGAAGGAAGAACCAGAAGAATCTGATGACGACATGGGCTTCAGTTTGTTTGATTAA 960 0.4875 MAVKLTKAQKKIAYDAKLCRLLDNYTQILVVAADNVGSNQLQNIRQGLRGDSVVLMGKNTMMKRSVKLHAESTGNKAFLNLVPLLVGNVGLIFTKGDVKEVSEVVAKYKVGAPARVGLIAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGEKVGSSEAALLSKLAIRPFSYGLVVVSVYDNGSVFSPAVLDLTDDDLLNMFADGVSMLSSLSLAISYPTIAAAPHMFVNSYKNVLAVAVATEYSFPQANEVKEYLKDPSKFAVAAAVAAPATGSAPAAASKEEEKKEEPEESDDDMGFSLFD 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium228g00001 319 PIRSF L10E 1 319 IPR030670 GO:0042254
Vium228g00001 319 Gene3D - 6 209 IPR043141 -
Vium228g00001 319 Pfam Insertion domain in 60S ribosomal protein L10P 114 183 IPR040637 -
Vium228g00001 319 CDD Ribosomal_P0_L10e 9 185 - -
Vium228g00001 319 Gene3D - 114 185 IPR043164 -
Vium228g00001 319 MobiDBLite consensus disorder prediction 288 319 - -
Vium228g00001 319 Pfam Ribosomal protein L10 8 108 IPR001790 -
Vium228g00001 319 FunFam 60S acidic ribosomal protein P0 113 186 - -
Vium228g00001 319 Pfam 60s Acidic ribosomal protein 234 318 - -
Vium228g00001 319 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P0 5 303 - -
Vium228g00001 319 MobiDBLite consensus disorder prediction 304 319 - -
Vium228g00001 319 SUPERFAMILY Ribosomal protein L10-like 8 134 IPR043141 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium228g00001 Vium-Chr228 8426 10707 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium228g00001 1 318 Cytoplasmic Ribosomal Protein Gene Family AT2G40010 79.245 0.0 502
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium228g00001 K02941 - qsa:O6P43_008964 503.056