Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2289g00002 ATGGCGTCGATTCAACGTTCGGCGACGAGCTCTGGATCTGAGGCAGGAGATCCGCAAATCGACGAGAGAAAGCGGAAGAGAATGCTGTCGAACCGCGAATCCGCGCGGCGATCGCGGATGAGGAAGCAGAAACAGCTGGAGGATTTGACCGATGAGGTTAGCAGATTGCAAGGCGCGAACAAGAAGCTTGTGGAGAACATAAAGGCCAAGGAAGAAGCGTGCGCTGAGACCGAATCAGCGAACAGCATTCTGAGGGCTCAGACCATGGAACTGACCGAACGATTACGCTTCTTGAACTCTATCCTTGAAATCGCTGAAGAGGTCGGAGGTTTATCGTTTGAGATTCCCGATATTCCAGATCCTCTCCTCAAGCCGTGGCAGATTCCTCATCCGACGCAACCGATTATGGCCACCGCAAATATGTTTCTGCGTTGA 435 0.5241 MASIQRSATSSGSEAGDPQIDERKRKRMLSNRESARRSRMRKQKQLEDLTDEVSRLQGANKKLVENIKAKEEACAETESANSILRAQTMELTERLRFLNSILEIAEEVGGLSFEIPDIPDPLLKPWQIPHPTQPIMATANMFLR 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2289g00002 144 PANTHER BZIP TRANSCRIPTION FACTOR 44 5 139 - -
Vium2289g00002 144 Gene3D - 21 77 - -
Vium2289g00002 144 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 26 41 IPR004827 GO:0003700|GO:0006355
Vium2289g00002 144 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 21 68 IPR004827 GO:0003700|GO:0006355
Vium2289g00002 144 MobiDBLite consensus disorder prediction 1 51 - -
Vium2289g00002 144 FunFam BZIP transcription factor 21 72 - -
Vium2289g00002 144 Coils Coil 32 80 - -
Vium2289g00002 144 CDD bZIP_plant_GBF1 24 75 IPR045314 GO:0003700|GO:0006355
Vium2289g00002 144 MobiDBLite consensus disorder prediction 1 16 - -
Vium2289g00002 144 SMART brlzneu 19 83 IPR004827 GO:0003700|GO:0006355
Vium2289g00002 144 Pfam bZIP transcription factor 23 81 IPR004827 GO:0003700|GO:0006355
Vium2289g00002 144 SUPERFAMILY Leucine zipper domain 23 71 IPR046347 GO:0003700|GO:0006355
Vium2289g00002 144 MobiDBLite consensus disorder prediction 17 51 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2289g00002 Vium-Chr2289 6618 7851 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2289g00002 1 142 bZIP Transcription Factor Family AT3G62420 52.740 4.74e-47 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vium2289g00002 bZIP_1 5.6e-12 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2289g00002 K25786 - gmx:778144 241.506