Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2287g00007 ATGGAGAAAGGAACAACGGTTTTTCCTTTTCCAATAGCAGTTTCTTGTCTTTTCATTATCTTCATTTTGGCTACTTCTGTTTCAGGTAGCCTGTTTTTCAACTTCTATGCAGCTTCATGCCCAACAGCAGAACTCATTGTAAGAAACAGTGTCAGTTCATCTTCTTCTTCTGATCCTTCAATCCCTGGGAAGCTGCTTCGCTTGGTTTTTCATGACTGCTTTGTCGAGGGATGTGATGCCTCTTTGATGCTGTTAGGGAATAACACAGAACAAAGTGATCCAGCAAATAGGTCTATTGGAGGATTTTCAGTAATAGAATCAGCAAAAAGAGTGCTTGAGTTCCTTTGTCCAGGAACAGTTTCTTGTGCTGACATAATTGCTTTGGCTGCAAGAGATGCCGTTGCACTCACTGGTGGTCCTATGATTCAAATTCCCACTGGAAGGAGAGATGGCATGGTTTCAGTTGCTTCAAATGTAAGACCCAACATTTTGGACACAAGTTTTACAATGGATCAGATGATTAACCGATTCTCCAATAAAGGCTTGTCCTTATTTGACCTTGTCATCCTTTCAGGGGCTCACACCATAGGAACAGCTCATTGCAGCTCATTCAGGGATAGGTTTCAACAAGACTCCAAGGGAAAGCTCACACTGATTGACAAAAGCCTTGATAGTAGCTATGCAAATGAGCTAATGAAGGAGTGTCCCTTAAGTGCAAGCCCATCAGTGTTAGTAAATAACGATCCTGAAACTTCCATGGTTTTTGACAACCAGTACTACAGAAATCTTGTCATCAACAAGGGGTTGTTCCAATCTGACTCTGCCTTGCTAAGTGACAACAGAACAAGGAGATTGGTGGAGGACTTGGCAAAAGATCAACAGTTTTTCTTTCAAAGTTGGGGCCAGTCTTTCTTGAAACTCACTACTATTGGAGTCAAAACTGGTGATGAGGGTGAAATTAGGAGCTTCTGTGCATCAACTAATGCATGA 990 0.4182 MEKGTTVFPFPIAVSCLFIIFILATSVSGSLFFNFYAASCPTAELIVRNSVSSSSSSDPSIPGKLLRLVFHDCFVEGCDASLMLLGNNTEQSDPANRSIGGFSVIESAKRVLEFLCPGTVSCADIIALAARDAVALTGGPMIQIPTGRRDGMVSVASNVRPNILDTSFTMDQMINRFSNKGLSLFDLVILSGAHTIGTAHCSSFRDRFQQDSKGKLTLIDKSLDSSYANELMKECPLSASPSVLVNNDPETSMVFDNQYYRNLVINKGLFQSDSALLSDNRTRRLVEDLAKDQQFFFQSWGQSFLKLTTIGVKTGDEGEIRSFCASTNA 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2287g00007 329 ProSiteProfiles Plant heme peroxidase family profile. 30 328 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium2287g00007 329 PANTHER - 14 328 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium2287g00007 329 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 16 - -
Vium2287g00007 329 Gene3D - 34 328 - -
Vium2287g00007 329 ProSitePatterns Peroxidases proximal heme-ligand signature. 186 196 IPR019793 -
Vium2287g00007 329 PRINTS Haem peroxidase superfamily signature 120 137 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium2287g00007 329 PRINTS Haem peroxidase superfamily signature 248 263 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium2287g00007 329 PRINTS Haem peroxidase superfamily signature 62 76 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium2287g00007 329 PRINTS Haem peroxidase superfamily signature 138 150 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium2287g00007 329 PRINTS Haem peroxidase superfamily signature 186 201 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium2287g00007 329 Gene3D Peroxidase, domain 2 164 307 - -
Vium2287g00007 329 FunFam Peroxidase 164 307 - -
Vium2287g00007 329 Pfam Peroxidase 48 292 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium2287g00007 329 PRINTS Plant peroxidase signature 302 315 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium2287g00007 329 PRINTS Plant peroxidase signature 262 279 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium2287g00007 329 PRINTS Plant peroxidase signature 100 113 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium2287g00007 329 PRINTS Plant peroxidase signature 138 153 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium2287g00007 329 PRINTS Plant peroxidase signature 40 59 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium2287g00007 329 PRINTS Plant peroxidase signature 64 84 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium2287g00007 329 PRINTS Plant peroxidase signature 119 129 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium2287g00007 329 PRINTS Plant peroxidase signature 185 197 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium2287g00007 329 PRINTS Plant peroxidase signature 246 261 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium2287g00007 329 SUPERFAMILY Heme-dependent peroxidases 31 328 IPR010255 GO:0004601|GO:0006979|GO:0020037
Vium2287g00007 329 CDD secretory_peroxidase 31 324 IPR033905 GO:0004601|GO:0042744
Vium2287g00007 329 FunFam Peroxidase 34 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2287g00007 Vium-Chr2287 61387 63713 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2287g00007 10 328 Peroxidase AT4G31760 62.422 5.21e-152 428
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2287g00007 K00430 K18328 gmx:100803223 581.637