Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2287g00004 ATGATAACTTGGAACCTGTTGCACGCAAGAATAAGTTGGACACACGCAATAGCGCTATTATTTCTTCATTTTTTGTTGTTGGTCAAAGAAATAGTACCTGGGAGCCCTGAATATTCAAGCTGTGATATGGGGTACCTCAATTCAGTCTTATCCTCTTCAGGCCAGGTTCATGCCACAGAAGATTCACCTGTCAGCGGAGGGGGCCTCAGTCAGAATGGCAAATTCAGCTATGGGTATGCTAGCTCCCCTGGCAAGAGATCATCAATGGAAGATTTTTATGAGACAAAAATTGATGGCGTTGACGGTGAAATTGTTGGCCTTTTTGGAGTTTTTGATGGTCATGGAGGTGCTCGTGCTGCCGAGTATGTCAAGCAAAACCTGTTTAGCAATTTGATCAGACATCCAAAATTCATTTCTGACACCAAATCTGCTATAGCTGATGCATATAACCATACCGACTCTGAATTTCTGAAATCTGAAAATAATCAAAACAGAGATGCTGGATCAACTGCTTCCACAGCCATTCTTGTCGGAGATCGATTGCTTGTTGCAAATGTTGGGGATTCCAGAGCTGTTATATGCAGGGGTGGAAATGCCATTGCTGTTTCCCGAGATCACAAGCCGGACCAAACTGATGAGAGGCGAAGGATTGAAGATGCAGGTGGCTTTGTTATGTGGGCTGGAACTTGGAGAGTTGGTGGCGTTCTTGCTGTTTCACGTGCATTTGGCGATAGACTCCTGAAGCAGTATGTTGTTGCTGATCCAGAAATCCAGGAAGAAAAGGTTGATAGCTCTCTTGAGTTTCTCATATTAGCCAGTGATGGGCTATGGGATGTTGTCTCAAATGAGGAAGCTGTTTCCATGATTAAACCGATTCAGGACGCGGAGGAGGCAGCAAAGAGACTGATGCAAGAAGCATACCAGAGAGGTAGTTCTGACAACATTACATGCGTGGTTGTTCGTTTCTTGTCGAATCAAGGTGCTTCTTCTCACAGTAACTCTGGCTAA 1008 0.4444 MITWNLLHARISWTHAIALLFLHFLLLVKEIVPGSPEYSSCDMGYLNSVLSSSGQVHATEDSPVSGGGLSQNGKFSYGYASSPGKRSSMEDFYETKIDGVDGEIVGLFGVFDGHGGARAAEYVKQNLFSNLIRHPKFISDTKSAIADAYNHTDSEFLKSENNQNRDAGSTASTAILVGDRLLVANVGDSRAVICRGGNAIAVSRDHKPDQTDERRRIEDAGGFVMWAGTWRVGGVLAVSRAFGDRLLKQYVVADPEIQEEKVDSSLEFLILASDGLWDVVSNEEAVSMIKPIQDAEEAAKRLMQEAYQRGSSDNITCVVVRFLSNQGASSHSNSG 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2287g00004 335 Gene3D - 68 328 IPR036457 -
Vium2287g00004 335 SMART PP2C_4 66 320 IPR001932 -
Vium2287g00004 335 SMART PP2C_SIG_2 71 322 IPR001932 -
Vium2287g00004 335 SUPERFAMILY PP2C-like 70 322 IPR036457 -
Vium2287g00004 335 CDD PP2Cc 75 322 IPR001932 -
Vium2287g00004 335 PANTHER PROTEIN PHOSPHATASE 64 321 IPR015655 GO:0004722|GO:0006470
Vium2287g00004 335 ProSitePatterns PPM-type phosphatase domain signature. 107 115 IPR000222 GO:0043169
Vium2287g00004 335 FunFam probable protein phosphatase 2C 59 68 326 - -
Vium2287g00004 335 ProSiteProfiles PPM-type phosphatase domain profile. 76 322 IPR001932 -
Vium2287g00004 335 Pfam Protein phosphatase 2C 105 315 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2287g00004 Vium-Chr2287 19272 24369 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2287g00004 43 334 PP2C-type Phosphatase Gene Family AT4G31750 90.411 0.0 537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2287g00004 K17506 - gmx:100795017 631.713