Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2285g00006 ATGGCGACGGCGCCGGGAAACCAAATGCTGGAGGGGGGAGGAGCGCCGCCGCCTCCGGGGACTGATATGACCGGAATATGCTTCCGAGACCAGCTCTGGCTCAACAGCTTCCCTCTAGATCGCAACCTTGTCTTCGATTACTTCGCCCTTTCCCCTTTCTATGATTGGACTTGCAACAACGAGCAACTCCGTATGCGATCCGTTCACCCCCTCGACCTCTCTCAACTCTCGAAAATGACGGGGACGGAGTATATGCTCAGCGAAGTTATGGAGCCGCACCTCTTTGTTATTCGCAAGCAGAAGAGAGATAGCCCTGACAAAGTTACGCCTATGCTCGCCTACTACGTCCTCGACGGTTCCATATACCAGGCTCCGCAACTCTGCAATGTTTTTGCTGCCAGAATTGGAAGGGCCCTTTATTACATAGAAAAGGCATTTACTACAGCTGCCTCCAAGTTGGAGAAGATTGGATATGCTGGGTCTGTGGATTCTGAAAACGAGACTGCATTGGTGGAGTCAAAGACTGCTAAGGAGACGATTGACATAAAGGAAGTTAAGCGTGTAGATCATATTCTTGCATCCTTGCAACGCAAGTTACCACCAGCTCCACCTCCACCACCCTTTCCAGAAGGGTATGTACCGCCTCCTACAGCTGAAGCTGAGAAAGGCACCGAAACTCAGGAAGCAGCAGAAACGCAAGCTCCTACTGCTGATCCCATAATTGATCAAGGACCATCAAAAAGAATGAAATTTTAA 756 0.5013 MATAPGNQMLEGGGAPPPPGTDMTGICFRDQLWLNSFPLDRNLVFDYFALSPFYDWTCNNEQLRMRSVHPLDLSQLSKMTGTEYMLSEVMEPHLFVIRKQKRDSPDKVTPMLAYYVLDGSIYQAPQLCNVFAARIGRALYYIEKAFTTAASKLEKIGYAGSVDSENETALVESKTAKETIDIKEVKRVDHILASLQRKLPPAPPPPPFPEGYVPPPTAEAEKGTETQEAAETQAPTADPIIDQGPSKRMKF 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2285g00006 251 MobiDBLite consensus disorder prediction 1 21 - -
Vium2285g00006 251 MobiDBLite consensus disorder prediction 197 251 - -
Vium2285g00006 251 MobiDBLite consensus disorder prediction 198 214 - -
Vium2285g00006 251 Pfam MED6 mediator sub complex component 26 151 IPR007018 GO:0003712|GO:0006357|GO:0016592
Vium2285g00006 251 Gene3D Mediator complex, subunit Med6 20 149 IPR038566 -
Vium2285g00006 251 FunFam Mediator of RNA polymerase II transcription subunit 6 20 149 - -
Vium2285g00006 251 PIRSF MED6_meta/plant 13 251 IPR016820 GO:0003712|GO:0006357|GO:0016592
Vium2285g00006 251 PANTHER MED-6-RELATED 3 251 IPR007018 GO:0003712|GO:0006357|GO:0016592
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2285g00006 Vium-Chr2285 16365 20342 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR MED6 Vium2285g00006 Med6 1.3e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2285g00006 K15128 - gmx:100792248 453.366