Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2285g00005 ATGGCGACGGCGCCGGGAAACCAAATGCTGGAGGGGGGAGGAGCGCCGCCGCCTCCGGGGACTGATATGACCGGAATATGCTTCCGAGACCAGCTCTGGCTCAACAGCTTCCCTCTAGATCGCAACCTTGTCTTCGATTACTTCGCCCTTTCCCCTTTCTATGATTGGACTTGCAACAACGAGCAACTCCGTATGCGATCCGTTCACCCCCTCGACCTCTCTCAACTCTCGAAAATGACGGGGACGGAGTATATGCTCAGCGAAGTTATGGAGCCGCACCTCTTTGTTATTCGCAAGCAGAAGAGAGATAGCCCTGACAAAGTTACGCCTATGCTCGCCTACTACGTCCTCGACGGTTCCATATACCAGGCTCCGCAACTCTGCAATGTTTTTGCTGCCAGAATTGGAAGGGCCCTTTATTACATAGAAAAGGCATTTACTACAGCTGCCTCCAAGTTGGAGAAGATTGGATATGTGGATTCTGAAAACGAGACTGCATTGGTGGAGTCAAAGACTGCTAAGGAGACGATTGACATAAAGGAAGTTAAGCGTGTAGATCATATTCTTGCATCCTTGCAACGCAAGTTACCACCAGCTCCACCTCCACCACCCTTTCCAGAAGGGTATGTACCGCCTCCTACAGCTGAAGCTGAGAAAGGCACCGAAACTCAGGAAGCAGCAGAAACGCAAGCTCCTACTGCTGATCCCATAATTGATCAAGGACCATCAAAAAGAATGAAATTTTAA 747 0.4993 MATAPGNQMLEGGGAPPPPGTDMTGICFRDQLWLNSFPLDRNLVFDYFALSPFYDWTCNNEQLRMRSVHPLDLSQLSKMTGTEYMLSEVMEPHLFVIRKQKRDSPDKVTPMLAYYVLDGSIYQAPQLCNVFAARIGRALYYIEKAFTTAASKLEKIGYVDSENETALVESKTAKETIDIKEVKRVDHILASLQRKLPPAPPPPPFPEGYVPPPTAEAEKGTETQEAAETQAPTADPIIDQGPSKRMKF 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2285g00005 248 PANTHER MED-6-RELATED 3 248 IPR007018 GO:0003712|GO:0006357|GO:0016592
Vium2285g00005 248 MobiDBLite consensus disorder prediction 1 21 - -
Vium2285g00005 248 Gene3D Mediator complex, subunit Med6 20 149 IPR038566 -
Vium2285g00005 248 Pfam MED6 mediator sub complex component 26 151 IPR007018 GO:0003712|GO:0006357|GO:0016592
Vium2285g00005 248 FunFam Mediator of RNA polymerase II transcription subunit 6 20 149 - -
Vium2285g00005 248 PIRSF MED6_meta/plant 13 248 IPR016820 GO:0003712|GO:0006357|GO:0016592
Vium2285g00005 248 MobiDBLite consensus disorder prediction 194 248 - -
Vium2285g00005 248 MobiDBLite consensus disorder prediction 195 211 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2285g00005 Vium-Chr2285 16363 20342 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR MED6 Vium2285g00005 Med6 1.3e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2285g00005 K15128 - gmx:100792248 442.58