Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2285g00001 ATGGAAAGCAATGGTGAAGCAGAAAACAGTAGTGGAAAAGTTTGTTCTCCATCATCAGAAAAGCCATCACTGATGCTGATGAAGAAGAAGAACAAGAAGAACAAGAAGAAGAAGCTTTGTTGCAGATATTGTAACAAGAAGTTCAGCAGTTTCCAAGCCTTGGGTGGACATCAGAATGCACACAAGGCAGAAAGAGCAGTAGCACAGAGAGAGAAGATTCTGAACATGGCTTCTGCATATGGCAGAACTTCATATGTTGGTGGTGTTGATTCAAACAACTGTCATGGATTGAGAGGAAAATCATGTGGGGTGTCAGAAATTTCCATGACTCATTTCAAGCCACATTTTGGACTAACACATGATCATCAATGGTCAAAGCAGTACACTTTGGATTATGTTCAAGCCACAATTCAAAAGTTGCAGACTTTGAATGATGAAGGGAGTGGATTTCATCAAGATCACATATCATATCAACCTTTAACTTTTTCTATACTTGGAGATGAAAAACCAAATTCAGAGTTGTTGTTTAATACTAGTTTATCTAATCAAGAAAAAGATTCTGCAGTGATATCTCGTAATGAAATTACAATGATGCATTATTTGAATGTCAAGAATTCAAGTGGTGATGAGAACTCTGATGAAGAAAATGGTTTTTCTGCAATGGCTGCTGGCAATGGAGTGGTGGAGGAACTTGATTTGACTCTCAAGATTGCCAATAGAGTGGTGGAGGAACCTGATTTGACTCTCAAGATTTGA 756 0.381 MESNGEAENSSGKVCSPSSEKPSLMLMKKKNKKNKKKKLCCRYCNKKFSSFQALGGHQNAHKAERAVAQREKILNMASAYGRTSYVGGVDSNNCHGLRGKSCGVSEISMTHFKPHFGLTHDHQWSKQYTLDYVQATIQKLQTLNDEGSGFHQDHISYQPLTFSILGDEKPNSELLFNTSLSNQEKDSAVISRNEITMMHYLNVKNSSGDENSDEENGFSAMAAGNGVVEELDLTLKIANRVVEEPDLTLKI 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2285g00001 251 ProSitePatterns Zinc finger C2H2 type domain signature. 40 61 IPR013087 -
Vium2285g00001 251 MobiDBLite consensus disorder prediction 1 31 - -
Vium2285g00001 251 ProSiteProfiles Zinc finger C2H2 type domain profile. 39 66 IPR013087 -
Vium2285g00001 251 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 27 236 IPR044246 GO:0009788
Vium2285g00001 251 SUPERFAMILY beta-beta-alpha zinc fingers 36 66 IPR036236 -
Vium2285g00001 251 Pfam C2H2-type zinc finger 40 63 - -
Vium2285g00001 251 MobiDBLite consensus disorder prediction 1 18 - -
Vium2285g00001 251 Gene3D Classic Zinc Finger 15 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2285g00001 Vium-Chr2285 3387 4142 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2285g00001 35 114 C2H2 Transcription Factor Family AT5G10970 40.741 1.55e-10 58.2