Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium227g00001 ATGATTCCACCCGCAAGAAAGCCAACCAATGGGTTAAAAAAGAAGTCAAGGTCCACCTCTCCTATGGATGAATCTCCTGAGTCCTCTGTGAATGTCTTCACTTTTAACGTGGCTCCCAACAGTGATGTGATGGAGTGTATATCTGACATTGCAAGCAGGGACCAGGTTAGTGTTACTGTGATTAGTGCCACTGGCAAAATCAACAAGGTGACTCTCCAATCTTCAACCAATGGTGAACCTGATCTCATGCTCCATGGACCACTCACCTTGGTCTCCCTCACCGGCTCCTACTTATACAGCAATCAGTACACCCTTCACCCTGGAGCCACCCCTCCCCTTTCTTTGTCCTTTGGGATCAACCTCTCCACCATTGGAGGCAAGGTCTTTTGTGGCGTTGTTGGTGGTAGAGTCATTGCTGGTGAGAATGTTAAGATCACAGTCTCCACCTATACAAACCCTAACATTTTGAAGTATTCGGCCGAAGGTCAAGAAGACGGTGATAATGACAATAATGATAACGAAAATGACAAGAATAACAATTTTGGTGATGAGCAATGA 558 0.4552 MIPPARKPTNGLKKKSRSTSPMDESPESSVNVFTFNVAPNSDVMECISDIASRDQVSVTVISATGKINKVTLQSSTNGEPDLMLHGPLTLVSLTGSYLYSNQYTLHPGATPPLSLSFGINLSTIGGKVFCGVVGGRVIAGENVKITVSTYTNPNILKYSAEGQEDGDNDNNDNENDKNNNFGDEQ 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium227g00001 185 ProSiteProfiles PPC domain profile profile. 27 173 IPR005175 -
Vium227g00001 185 CDD DUF296 31 140 IPR005175 -
Vium227g00001 185 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 11 179 IPR014476 GO:0003680
Vium227g00001 185 Gene3D - 29 163 - -
Vium227g00001 185 SUPERFAMILY AF0104/ALDC/Ptd012-like 28 154 - -
Vium227g00001 185 MobiDBLite consensus disorder prediction 1 28 - -
Vium227g00001 185 Pfam Plants and Prokaryotes Conserved (PCC) domain 32 150 IPR005175 -
Vium227g00001 185 MobiDBLite consensus disorder prediction 159 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium227g00001 Vium-Chr227 12491 13048 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium227g00001 33 176 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 23.973 4.43e-11 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium227g00001 - - vun:114188422 191.815