Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2279g00001 ATGAATGATGATGGAAATTTCCAACTATTAGATCAAAATTTTGTGTCATTATGGGAGAGTTTCACTCATCCAACTGACACATTGGTTCCAACTCAAGTAATGGAGTTAGGTGGAGAACTCTATTCTCGACAAGGACAGCTCAACTTCTCAACTGGAAAGTTCAAACTTTATCTACAACACGATGGGAATCTTGTGCTTAAGCTTATAAATTTGCTTAGCAACTATAGTAATGCTGTTTACTTTAATACTGGCACTGCTGATTTAAACAACGAAACAAATGTTGGCAAGAGATTTGTATTTGATAAATCAGGCTTCTTGTATGTAATGAAGAAAAGTGGGGAAAAGTTTAATGTCAGCACATCAAACGATACCATCTCTTCTAATGATGTCTACTACAAAGCAACACTCAATTTTGATGGAGTTTTGACTGTATCATATTATCCCAAAGATCCAAACAAAGAACAAAAGTGGGTCACTTTAAAGACAATACCAGAAAATATTTGTCTAGATTCTACTTTCACAGATGGTGGAGGAGTTTGTGGATTTAATAGCATATGCAACCTGAAAGATGACCAGAGACCCATGTGTAACTGCCCAGAGAAATATTCTCTAATTGATTCAAATAACATGTATGGTGGTTGCATACCAAATTTCCAAGTAATTTGTCAAGGAGGTGGTCAGATGGGTTCACTAGATGATTACATGATGAAAGAGTTGCAAAACACTGACTGGCCAAAATCGGATTATGAAACAGTAAGTCCTTGTACTCTAGAACAGTGTACAAAATCTTGTTCGCAAGATTGCTTATGTGTGCTGGTTACTTTCAGTGGAAATTCTTGCTGGAAGAAGAAGCTACCACTCACAAATGGGAGAAGAGGTAAAGAAGTAAATGCAACTTCTATCATGAAATTGATGAAAAATGATGAGCTCTTGACTCCTTTACCAAACAAAAAGATGAAAGAAGATCATGATACCTTGATCATCGTGATATCAGTTCTTTTGGGCTTCTCTGTGTTGGTCATTTTAATGTTGGTTGGTACAATGTATTTTGGTTTCTCCTACAACCGGAAGAAGATCAAAAGTGGTGGAACCAACGATGGTGTTGTTGGGAAAAACTTGCGTAACTTCACCTTCAAGGAACTTGTAGAAGCAACAAGAAACTTTAGTGAAGAACTGGGAAGGGGATCTTTCAGCATTGTGTACAAAGGAAGAATAGACATGACAAGTGTGGCTGTTAAGAAATTAGACAAATTGTTTCAAGACAATGATAAGGAATTTCAAACTGAAGTGAATGTAATAGGTCAAACTCATCATAGGAATCTGGTTCGTCTACTTGGATATTGCAATGAAGGACAACACAGAATTTTGGTGTACGAGTTTATGAGCAATGGCACTTTAGCAAGCTTCCTTTTCACCCCTTTGAAAGCAAATTGGAGACAACGATTTGACATTGCCTCTGGGATTGCAAGAGGTCTTGTTTACTTGCATGAGGAATGTTGTACCCAAATCATCCACTGTGACATAAAGCCACAGAATATACTTCTAGATGATCAATGTAATGCCAGAATTTCAGATTTTGGATTAGCAAAGTTGTTACTGATCAATCAAAGCCACACTGAAACTGGAATCAGAGGAACCAAAGGGTATGTTGCACCAGATTGGTTTAGAAGTTCACCAATCACTACTAAGGTTGACACTTATAGTTTCGGAGTGTTGTTATTAGAGATAATTTGTTGCAGGAGGAATGTGGAAAAGGAGCTTGCTGATGAAGAAAAAGGGATATTGACAGATTGGGCATATGATTGCTACAAGAGTAGAAGACTAGACATTCTTCTAGAAAATGATGATGAAGCTATTAATAACATTAATAGTTTTGAAAAATTTGTCATGGTTGCTCTTTGGTGTATTCATGAAGATCCCTCTCTTAGGCCAACAATGAAGAACGTTTTGCTGATGCTGGAAGGAATTATTGAAGTTTCAAAACCCCCAAATCCCTACCTTTACAGTTCTGCCAGTTAA 2019 0.3705 MNDDGNFQLLDQNFVSLWESFTHPTDTLVPTQVMELGGELYSRQGQLNFSTGKFKLYLQHDGNLVLKLINLLSNYSNAVYFNTGTADLNNETNVGKRFVFDKSGFLYVMKKSGEKFNVSTSNDTISSNDVYYKATLNFDGVLTVSYYPKDPNKEQKWVTLKTIPENICLDSTFTDGGGVCGFNSICNLKDDQRPMCNCPEKYSLIDSNNMYGGCIPNFQVICQGGGQMGSLDDYMMKELQNTDWPKSDYETVSPCTLEQCTKSCSQDCLCVLVTFSGNSCWKKKLPLTNGRRGKEVNATSIMKLMKNDELLTPLPNKKMKEDHDTLIIVISVLLGFSVLVILMLVGTMYFGFSYNRKKIKSGGTNDGVVGKNLRNFTFKELVEATRNFSEELGRGSFSIVYKGRIDMTSVAVKKLDKLFQDNDKEFQTEVNVIGQTHHRNLVRLLGYCNEGQHRILVYEFMSNGTLASFLFTPLKANWRQRFDIASGIARGLVYLHEECCTQIIHCDIKPQNILLDDQCNARISDFGLAKLLLINQSHTETGIRGTKGYVAPDWFRSSPITTKVDTYSFGVLLLEIICCRRNVEKELADEEKGILTDWAYDCYKSRRLDILLENDDEAINNINSFEKFVMVALWCIHEDPSLRPTMKNVLLMLEGIIEVSKPPNPYLYSSAS 672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2279g00001 672 ProSitePatterns Protein kinases ATP-binding region signature. 392 414 IPR017441 GO:0005524
Vium2279g00001 672 CDD STKc_IRAK 392 656 - -
Vium2279g00001 672 FunFam S-receptor-like serine/threonine-protein kinase 355 460 - -
Vium2279g00001 672 Gene3D - 24 175 - -
Vium2279g00001 672 SUPERFAMILY alpha-D-mannose-specific plant lectins 41 142 IPR036426 -
Vium2279g00001 672 ProSiteProfiles Protein kinase domain profile. 386 667 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2279g00001 672 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 461 661 - -
Vium2279g00001 672 SMART serkin_6 386 657 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2279g00001 672 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 1 665 - -
Vium2279g00001 672 SUPERFAMILY alpha-D-mannose-specific plant lectins 1 85 IPR036426 -
Vium2279g00001 672 FunFam Serine/threonine-protein kinase 25 171 - -
Vium2279g00001 672 Gene3D Phosphorylase Kinase; domain 1 361 460 - -
Vium2279g00001 672 SUPERFAMILY Protein kinase-like (PK-like) 371 654 IPR011009 -
Vium2279g00001 672 Pfam Protein kinase domain 389 650 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2279g00001 672 Gene3D Transferase(Phosphotransferase) domain 1 461 663 - -
Vium2279g00001 672 ProSitePatterns Serine/Threonine protein kinases active-site signature. 503 515 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2279g00001 Vium-Chr2279 595 2613 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2279g00001 372 655 Receptor kinase-like Gene Family AT1G60800 43.493 1.06e-69 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vium2279g00001 Pkinase 2.8e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2279g00001 - - gmx:100796619 1129.78