Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2277g00003 ATGATTCCAGCGAGAAACATGCCGTCGATGATAGCTAGGAAGAACAAGAACAACCTTGGTGGGTTTGGATCATCTTCAACTTTCACTCTTGCGCAGGTAATGTTCCAGCCGAACCTGATGGAAGCCTTGGAGATGGGTCAGAACACTTTAGAGAGTGAGGTCCCCCAAATTCGTGAAGATGAGTTCGATAATGCCACAATTTCTAGTAGTGAAAACCATGAAGGTGCCTCTGGTGAAGACCAAGACCCTCGTCCAAACAAGAAGAAGCGTTACCACCGCCACACCCAACACCAGATCCAGGAGATGGAAGCATTCTTCAAGGAGTGTCCACACCCAGATGATAAACAAAGGAAAGAACTGAGCAGGGAATTAGGGTTAGAACCATTGCAGGTTAAGTTTTGGTTTCAGAACAAACGTACCCAGATGAAGACACAACACGAGCGGCATGAGAATACACAACTTAGAACCGAGAACGAGAAGCTTCGAGCTGATAACATGAGGTATAGGGAAGCTCTCAGCAATGCTTCGTGTCCTAATTGTGGTGGACCAACAGCAATAGGAGAAATGTCATTTGATGAACATCACTTGAGGCTTGAGAATGCAAGGCTTAGAGAAGAGATTGATAGGATTTCAGCAATTGCTGCTAAGTATGTAGGGAAGCCTGTGGTGAATTATTCAAATATTTCTCCTTCCCTCCCTCCTCGTCCTCTAGAACTTGGGGTTGGTGCTGGTTTTGGAAGCCAACCAGCTATTGGTGTGGACATGTATGGAGCTGGAGATCTTCTGAGATCAATTAGTGGACCCACTGAAGCTGATAAACCCATCATAATAGAGCTAGCTGTTGCAGCTATGGAGGAGCTCATTGGAATGGCACAAATGGGTGATCCCCTTTGGTTAACTACTCTTGATGCCTCATCTACTATACTCAATGAGGACGAATACATCAGATCTTTCCCTCGAGGAATTGGCCCAAAACCTTCTGGCTTCAAATGTGAAGCTTCTCGAGAAACTGCTGTTGTTATCATGAACCATGTCAGCCTCGTTGAGATTCTCATGGATGTTAACCAATGGTCCACAGTGTTCTCTGGTATAGTCTCAAGAGCCATGACTCTGGAAGTGCTATCCACAGGAGTGGCTGGGAACTACAACGGTGCCTTACAAGTGATGACAGCAGAATTGCAACTACCTACCCCTCTTGTGCCAACTCGTGAGAGTTATTTTGTAAGGTATTGTAAGCAACATTCGGATGGAACTTGGGCAGTGGTGGATGTGTCTCTGGATAATTTGCGCCCTAGTCCTTCAGCCAGATGTAGGAGAAGACCTTCTGGTTGCTTAATTCAGGAAATGCCAAATGGCTATTCAAAGGTCACGTGGGTCGAGCATGTTGAAGTGGATGACAGAGGTGTTCATAATCTTTACAAACAGCTTGTTAGCTCTGGACATGCATTTGGTGCCAAACGTTGGGTTGCAACCTTGGATAGACAGTGTGAAAGACTTGCCAGTGCTATGGCAACAAATATTCCCACAGTTGATGTTGGTGTGATAACAAACCAAGAGGGGAGAAAGAGTATGATGAAACTGGCTGAAAGGATGGTGATAAGCTTTTGTGCTGGAGTGAGTGCTTCCACTGCTCACACATGGACAACACTGTCTGGAACAGGTGCCGATGATGTAAGGGTGATGACCCGAAAGAGTGTGGATGATCCTGGAAGACCTCCTGGCATTGTTCTCAGTGCAGCCACTTCTTTTTGGCTTCCAGTTCCACCTAAACGAGTTTTTGACTTTCTCCGTGATGAGAACTCTAGGAATGAGTGGGACATTCTTTCCAATGGTGGAGTTGTGCAAGAAATGGCACACATTGCAAATGGACGAGATACTGGAAACTGTGTGTCTCTACTTCGAGTAAATAGTGCAAATTCAAGTCAGAGTAACATGTTGATACTGCAAGAGAGTTGCACCGATTCAACAGGGTCTTTTGTGATATATGCTCCAGTAGATATTGTTGCAATGAATGTAGTTCTAAACGGAGGAGATCCAGATTATGTGGCACTTCTTCCTTCAGGGTTTGCAATTCTCCCAGATGGAACTATATCTCACGAAACTGGACCTGGTGGATCTCTTTTAACTGTTGCGTTTCAAATACTGGTTGATTCGGTTCCAACTGCTAAGCTTTCTCTTGGATCTGTTGCCACTGTCAACAATCTCATTGCATGCACTGTTGAGAGAATCAAAGCATCTTTGTCTGGTGAAACTGCTTGA 2259 0.4506 MIPARNMPSMIARKNKNNLGGFGSSSTFTLAQVMFQPNLMEALEMGQNTLESEVPQIREDEFDNATISSSENHEGASGEDQDPRPNKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQHERHENTQLRTENEKLRADNMRYREALSNASCPNCGGPTAIGEMSFDEHHLRLENARLREEIDRISAIAAKYVGKPVVNYSNISPSLPPRPLELGVGAGFGSQPAIGVDMYGAGDLLRSISGPTEADKPIIIELAVAAMEELIGMAQMGDPLWLTTLDASSTILNEDEYIRSFPRGIGPKPSGFKCEASRETAVVIMNHVSLVEILMDVNQWSTVFSGIVSRAMTLEVLSTGVAGNYNGALQVMTAELQLPTPLVPTRESYFVRYCKQHSDGTWAVVDVSLDNLRPSPSARCRRRPSGCLIQEMPNGYSKVTWVEHVEVDDRGVHNLYKQLVSSGHAFGAKRWVATLDRQCERLASAMATNIPTVDVGVITNQEGRKSMMKLAERMVISFCAGVSASTAHTWTTLSGTGADDVRVMTRKSVDDPGRPPGIVLSAATSFWLPVPPKRVFDFLRDENSRNEWDILSNGGVVQEMAHIANGRDTGNCVSLLRVNSANSSQSNMLILQESCTDSTGSFVIYAPVDIVAMNVVLNGGDPDYVALLPSGFAILPDGTISHETGPGGSLLTVAFQILVDSVPTAKLSLGSVATVNNLIACTVERIKASLSGETA 752
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2277g00003 752 ProSitePatterns 'Homeobox' domain signature. 120 143 IPR017970 GO:0000981|GO:0006355
Vium2277g00003 752 Gene3D - 74 162 - -
Vium2277g00003 752 FunFam Homeobox-leucine zipper protein GLABRA 2 278 497 - -
Vium2277g00003 752 Pfam START domain 279 498 IPR002913 GO:0008289
Vium2277g00003 752 CDD homeodomain 88 146 IPR001356 GO:0003677
Vium2277g00003 752 MobiDBLite consensus disorder prediction 67 96 - -
Vium2277g00003 752 SUPERFAMILY Homeodomain-like 74 145 IPR009057 -
Vium2277g00003 752 FunFam Homeobox-leucine zipper protein HDG1 75 161 - -
Vium2277g00003 752 Pfam Homeodomain 88 143 IPR001356 GO:0003677
Vium2277g00003 752 SUPERFAMILY Bet v1-like 269 500 - -
Vium2277g00003 752 SMART START_1 278 498 IPR002913 GO:0008289
Vium2277g00003 752 Coils Coil 151 171 - -
Vium2277g00003 752 ProSiteProfiles 'Homeobox' domain profile. 85 145 IPR001356 GO:0003677
Vium2277g00003 752 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 86 747 IPR042160 -
Vium2277g00003 752 Gene3D - 325 495 IPR023393 -
Vium2277g00003 752 ProSiteProfiles START domain profile. 269 501 IPR002913 GO:0008289
Vium2277g00003 752 CDD START_ArGLABRA2_like 273 497 - -
Vium2277g00003 752 SMART HOX_1 86 149 IPR001356 GO:0003677
Vium2277g00003 752 SUPERFAMILY Bet v1-like 517 744 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2277g00003 Vium-Chr2277 9225 14472 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2277g00003 34 752 Homeobox Transcription Factor Family AT1G05230 78.035 0.0 1165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vium2277g00003 START 3.6e-59 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2277g00003 K09338 - gmx:100782260 1415.98