Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2277g00002 ATGTTCCAGCCGAACCTGATGGAAGCCTTGGAGATGGGTCAGAACACTTTAGAGAGTGAGGTCCCCCAAATTCGTGAAGATGAGTTCGATAATGCCACAATTTCTAGTAGTGAAAACCATGAAGGTGCCTCTGGTGAAGACCAAGACCCTCGTCCAAACAAGAAGAAGCGTTACCACCGCCACACCCAACACCAGATCCAGGAGATGGAAGCATTCTTCAAGGAGTGTCCACACCCAGATGATAAACAAAGGAAAGAACTGAGCAGGGAATTAGGGTTAGAACCATTGCAGGTTAAGTTTTGGTTTCAGAACAAACGTACCCAGATGAAGACACAACACGAGCGGCATGAGAATACACAACTTAGAACCGAGAACGAGAAGCTTCGAGCTGATAACATGAGGTATAGGGAAGCTCTCAGCAATGCTTCGTGTCCTAATTGTGGTGGACCAACAGCAATAGGAGAAATGTCATTTGATGAACATCACTTGAGGCTTGAGAATGCAAGGCTTAGAGAAGAGATTGATAGGATTTCAGCAATTGCTGCTAAGTATGTAGGGAAGCCTGTGGTGAATTATTCAAATATTTCTCCTTCCCTCCCTCCTCGTCCTCTAGAACTTGGGGTTGGTGCTGGTTTTGGAAGCCAACCAGCTATTGGTGTGGACATGTATGGAGCTGGAGATCTTCTGAGATCAATTAGTGGACCCACTGAAGCTGATAAACCCATCATAATAGAGCTAGCTGTTGCAGCTATGGAGGAGCTCATTGGAATGGCACAAATGGGTGATCCCCTTTGGTTAACTACTCTTGATGCCTCATCTACTATACTCAATGAGGACGAATACATCAGATCTTTCCCTCGAGGAATTGGCCCAAAACCTTCTGGCTTCAAATGTGAAGCTTCTCGAGAAACTGCTGTTGTTATCATGAACCATGTCAGCCTCGTTGAGATTCTCATGGATGTTAACCAATGGTCCACAGTGTTCTCTGGTATAGTCTCAAGAGCCATGACTCTGGAAGTGCTATCCACAGGAGTGGCTGGGAACTACAACGGTGCCTTACAAGTGATGACAGCAGAATTGCAACTACCTACCCCTCTTGTGCCAACTCGTGAGAGTTATTTTGTAAGGTATTGTAAGCAACATTCGGATGGAACTTGGGCAGTGGTGGATGTGTCTCTGGATAATTTGCGCCCTAGTCCTTCAGCCAGATGTAGGAGAAGACCTTCTGGTTGCTTAATTCAGGAAATGCCAAATGGCTATTCAAAGGTCACGTGGGTCGAGCATGTTGAAGTGGATGACAGAGGTGTTCATAATCTTTACAAACAGCTTGTTAGCTCTGGACATGCATTTGGTGCCAAACGTTGGGTTGCAACCTTGGATAGACAGTGTGAAAGACTTGCCAGTGCTATGGCAACAAATATTCCCACAGTTGATGTTGGTGTGATAACAAACCAAGAGGGGAGAAAGAGTATGATGAAACTGGCTGAAAGGATGGTGATAAGCTTTTGTGCTGGAGTGAGTGCTTCCACTGCTCACACATGGACAACACTGTCTGGAACAGGTGCCGATGATGTAAGGGTGATGACCCGAAAGAGTGTGGATGATCCTGGAAGACCTCCTGGCATTGTTCTCAGTGCAGCCACTTCTTTTTGGCTTCCAGTTCCACCTAAACGAGTTTTTGACTTTCTCCGTGATGAGAACTCTAGGAATGAGTGGGACATTCTTTCCAATGGTGGAGTTGTGCAAGAAATGGCACACATTGCAAATGGACGAGATACTGGAAACTGTGTGTCTCTACTTCGAGTAAATAGTGCAAATTCAAGTCAGAGTAACATGTTGATACTGCAAGAGAGTTGCACCGATTCAACAGGGTCTTTTGTGATATATGCTCCAGTAGATATTGTTGCAATGAATGTAGTTCTAAACGGAGGAGATCCAGATTATGTGGCACTTCTTCCTTCAGGGTTTGCAATTCTCCCAGATGGAACTATATCTCACGAAACTGGACCTGGTGGATCTCTTTTAACTGTTGCGTTTCAAATACTGGTTGATTCGGTTCCAACTGCTAAGCTTTCTCTTGGATCTGTTGCCACTGTCAACAATCTCATTGCATGCACTGTTGAGAGAATCAAAGCATCTTTGTCTGGTGAAACTGCTTGA 2160 0.4505 MFQPNLMEALEMGQNTLESEVPQIREDEFDNATISSSENHEGASGEDQDPRPNKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQHERHENTQLRTENEKLRADNMRYREALSNASCPNCGGPTAIGEMSFDEHHLRLENARLREEIDRISAIAAKYVGKPVVNYSNISPSLPPRPLELGVGAGFGSQPAIGVDMYGAGDLLRSISGPTEADKPIIIELAVAAMEELIGMAQMGDPLWLTTLDASSTILNEDEYIRSFPRGIGPKPSGFKCEASRETAVVIMNHVSLVEILMDVNQWSTVFSGIVSRAMTLEVLSTGVAGNYNGALQVMTAELQLPTPLVPTRESYFVRYCKQHSDGTWAVVDVSLDNLRPSPSARCRRRPSGCLIQEMPNGYSKVTWVEHVEVDDRGVHNLYKQLVSSGHAFGAKRWVATLDRQCERLASAMATNIPTVDVGVITNQEGRKSMMKLAERMVISFCAGVSASTAHTWTTLSGTGADDVRVMTRKSVDDPGRPPGIVLSAATSFWLPVPPKRVFDFLRDENSRNEWDILSNGGVVQEMAHIANGRDTGNCVSLLRVNSANSSQSNMLILQESCTDSTGSFVIYAPVDIVAMNVVLNGGDPDYVALLPSGFAILPDGTISHETGPGGSLLTVAFQILVDSVPTAKLSLGSVATVNNLIACTVERIKASLSGETA 719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2277g00002 719 SMART HOX_1 53 116 IPR001356 GO:0003677
Vium2277g00002 719 MobiDBLite consensus disorder prediction 11 63 - -
Vium2277g00002 719 Gene3D - 292 462 IPR023393 -
Vium2277g00002 719 CDD START_ArGLABRA2_like 240 464 - -
Vium2277g00002 719 ProSiteProfiles 'Homeobox' domain profile. 52 112 IPR001356 GO:0003677
Vium2277g00002 719 SUPERFAMILY Bet v1-like 236 467 - -
Vium2277g00002 719 Pfam Homeodomain 55 110 IPR001356 GO:0003677
Vium2277g00002 719 FunFam Homeobox-leucine zipper protein GLABRA 2 245 464 - -
Vium2277g00002 719 SUPERFAMILY Bet v1-like 484 711 - -
Vium2277g00002 719 CDD homeodomain 55 113 IPR001356 GO:0003677
Vium2277g00002 719 ProSitePatterns 'Homeobox' domain signature. 87 110 IPR017970 GO:0000981|GO:0006355
Vium2277g00002 719 Pfam START domain 246 465 IPR002913 GO:0008289
Vium2277g00002 719 SUPERFAMILY Homeodomain-like 41 112 IPR009057 -
Vium2277g00002 719 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 53 714 IPR042160 -
Vium2277g00002 719 Coils Coil 118 138 - -
Vium2277g00002 719 ProSiteProfiles START domain profile. 236 468 IPR002913 GO:0008289
Vium2277g00002 719 SMART START_1 245 465 IPR002913 GO:0008289
Vium2277g00002 719 FunFam Homeobox-leucine zipper protein HDG1 42 128 - -
Vium2277g00002 719 Gene3D - 41 129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2277g00002 Vium-Chr2277 9225 15490 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2277g00002 1 719 Homeobox Transcription Factor Family AT1G05230 78.035 0.0 1165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vium2277g00002 START 3.3e-59 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2277g00002 K09338 - gmx:100782260 1381.31