Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2277g00001 ATGGTCATTCTTGCCATTGAATATAATAAAGCTGNTTCTGGCTTCAAATGTGAAGCTTCTCGAGAAACTGCTGTTGTTATCATGAACCATGTCAGCCTCGTTGAGATTCTCATGGATGTTAACCAATGGTCAACAGTGTTCTCTGGTATAGTCTCAAGAGCCATGACTCTGGAAGTGCTATCCACAGGAGTGGCTGGGAACTACAACGGTGCCTTACAAGTGATGACAGCAGAATTGCAACTACCTACCCCTCTTGTGCCAACTCGTGAGAGTTATTTTGTAAGGTATTGTAAGCAACATTCGGATGGAACTTGGGCAGTGGTGGATGTGTCTCTGGATAATTTGCGCCCTAGTCCTTCAGCCAGATGTAGGAGAAGACCTTCTGGTTGCTTAATTCAGGAAATGCCAAATGGCTATTCAAAGGTCACGTGGGTCGAGCATGTTGAAGTGGATGACAGAGGTGTTCATAATCTTTACAAACAGCTTGTTAGCTCTGGACATGCATTTGGTGCCAAACGTTGGGTTGCAACCTTGGATAGACAGTGTGAAAGACTTGCCAGTGCTATGGCAACAAATATTCCCACAGTTGATGTTGGTGTGATAACAAACCAAGAGGGGAGAAAGAGTATGATGAAACTGGCTGAAAGGATGGTGATAAGCTTTTGTGCTGGAGTGAGTGCTTCCACTGCTCACACATGGACAACACTGTCTGGAACAGGTGCCGATGATGTAAGGGTGATGACCCGAAAGAGTGTGGATGATCCTGGAAGACCTCCTGGCATTGTTCTCAGTGCAGCCACTTCTTTTTGGCTTCCAGTTCCACCTAAACGAGTTTTTGACTTTCTCCGTGATGAGAACTCTAGGAATGAGTGGGACATTCTTTCCAATGGTGGAGTTGTGCAAGAAATGGCACACATTGCAAATGGACGAGATACTGGAAACTGTGTGTCTCTACTTCGAGTAAATAGTGCAAATTCAAGTCAGAGTAACATGTTGATACTGCAAGAGAGTTGCACCGATTCAACAGGGTCTTTTGTGATATATGCTCCAGTAGATATTGTTGCAATGAATGTAGTTCTAAACGGAGGAGATCCAGATTATGTGGCACTTCTTCCTTCAGGGTTTGCAATTCTCCCAGATGGAACTATATCTCACGAAACTGGACCTGGTGGATCTCTTTTAACTGTTGCGTTTCAAATACTGGTTGATTCGGTTCCAACTGCTAAGCTTTCTCTTGGATCTGTTGCCACTGTCAACAATCTCATTGCATGCACTGTTGAGAGAATCAAAGCATCTTTGTCTGGTGAAACTGCTTGA 1317 0.4419 MVILAIEYNKAXSGFKCEASRETAVVIMNHVSLVEILMDVNQWSTVFSGIVSRAMTLEVLSTGVAGNYNGALQVMTAELQLPTPLVPTRESYFVRYCKQHSDGTWAVVDVSLDNLRPSPSARCRRRPSGCLIQEMPNGYSKVTWVEHVEVDDRGVHNLYKQLVSSGHAFGAKRWVATLDRQCERLASAMATNIPTVDVGVITNQEGRKSMMKLAERMVISFCAGVSASTAHTWTTLSGTGADDVRVMTRKSVDDPGRPPGIVLSAATSFWLPVPPKRVFDFLRDENSRNEWDILSNGGVVQEMAHIANGRDTGNCVSLLRVNSANSSQSNMLILQESCTDSTGSFVIYAPVDIVAMNVVLNGGDPDYVALLPSGFAILPDGTISHETGPGGSLLTVAFQILVDSVPTAKLSLGSVATVNNLIACTVERIKASLSGETA 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2277g00001 438 ProSiteProfiles START domain profile. 1 187 IPR002913 GO:0008289
Vium2277g00001 438 Pfam START domain 14 184 IPR002913 GO:0008289
Vium2277g00001 438 SMART START_1 2 184 IPR002913 GO:0008289
Vium2277g00001 438 FunFam Homeobox-leucine zipper protein GLABRA 2 3 183 - -
Vium2277g00001 438 Gene3D - 8 181 IPR023393 -
Vium2277g00001 438 CDD START_ArGLABRA2_like 14 183 - -
Vium2277g00001 438 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 9 433 IPR042160 -
Vium2277g00001 438 SUPERFAMILY Bet v1-like 203 430 - -
Vium2277g00001 438 SUPERFAMILY Bet v1-like 16 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2277g00001 Vium-Chr2277 3569 7386 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2277g00001 13 438 Homeobox Transcription Factor Family AT1G05230 87.383 0.0 782
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2277g00001 K09338 - gmx:100782260 821.231