Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2274g00022 ATGGCGGTTATGGATTACAGAGGCCTTCTGCTTCTCCTTATTCTCTTTCTTCCTTCATCAAACTTTGCAACGTCTCACTCCATAGTGCGCTTCCTTCCTGGCTTCCATGGACCCCTTCCTTTTCTACTTCAAACTGGGTATGTGGAAGTGGGTGAAAGTGAAGCAGAGGAGAATGCAGAACTGTTCTACTATTTTATTGAGTCGGAGAATGACCCCAAAGGGGACCCTCTTCTTCTTTGGCTAACTGGGGGACCCGGTTGCTCCGCTTTTTCTGGGTTAGTTTTTGAAATAGGTCCACTGTCCTTTGAAAACCAGGAATACAATGGGAGCTTACCTAATTTGACATTGAAGCCACAATCATGGACAAAGGTAAGTAGCATTATATTTGTGGATCTGCCAGCGGGTACAGGCTTCTCTTATCCCAAAACAGAACTTGCTGTTAATCAAAGTACCTCCAAGCTTGTTCGCCATGCTCATCAATTTCTTAGGAAGTGGCTAATTGATCATCCGGAATTTCTCTCAAATAAGGTGTACATTGCTGGCGACTCATTCTGTGGCCTTCCTATACCAGTTATTGTTCAAGAAATTTCATACGGAAACAAAGGTGGTATCCAACCATGGATAAATCTCCAGGGATACATTCTGGGAAATCCCATAACAACATCCACTGAAAAAAACTACGAAATTCCGTTTAATCATGGCATGGCACTCATTTCTGATGAACTCTACCAGTCACTGCAAAGGAATTGCAGAGGAGAGTATCAAAACATAGACCCAACAAACGCATTTTGTGCAAGGGACATGCAGTCCTACGAGGAGTCTATTTCAGGAATTGCAATTGGGCATGTTTTGGAACCCGATTGTGAGGAGTCTGCTCTGCGTAATCCAATTCAAGATACTTGGAGCTGCAGGAGGTCTCTTGCTCATGAATCCTATCCTCTCACAATGCCACCTTTAAATTGTAGGGCTCATGCATATGTCCTTTCTAGCTATTGGGCCAATGATGATGATGTCCGCAAAGCACTGCATATTCGGAAGGGAACTAAAGGGAAATGGAAGCGCTGTAACTATGATATACCTTTTAAGACTGATATCTCTAACAGCTTCCAATATCACGTCAATCTCAGCAGAAAAGGCTACCGTTCATTGATATACAGTGGGGATCATGACATGGTAGTTCCATTCCTGTCTACACAAGCGTGGATAAGAGCTTTAAACTATTCCATCGTCTCTGACTGGAGGCAGTGGTATTACAATGGCCAAGTCGCAGGATACACGAGAACTTACTCAAATCAGATGACATTTGCGACTGTGAAGGGTGGAGGGCACACAGCTCCGGAGTTCAAACCTGAGGAATGTTTAGCCATGTTCATGAGATGGATATCTAATAAGCCACTCTGA 1401 0.4368 MAVMDYRGLLLLLILFLPSSNFATSHSIVRFLPGFHGPLPFLLQTGYVEVGESEAEENAELFYYFIESENDPKGDPLLLWLTGGPGCSAFSGLVFEIGPLSFENQEYNGSLPNLTLKPQSWTKVSSIIFVDLPAGTGFSYPKTELAVNQSTSKLVRHAHQFLRKWLIDHPEFLSNKVYIAGDSFCGLPIPVIVQEISYGNKGGIQPWINLQGYILGNPITTSTEKNYEIPFNHGMALISDELYQSLQRNCRGEYQNIDPTNAFCARDMQSYEESISGIAIGHVLEPDCEESALRNPIQDTWSCRRSLAHESYPLTMPPLNCRAHAYVLSSYWANDDDVRKALHIRKGTKGKWKRCNYDIPFKTDISNSFQYHVNLSRKGYRSLIYSGDHDMVVPFLSTQAWIRALNYSIVSDWRQWYYNGQVAGYTRTYSNQMTFATVKGGGHTAPEFKPEECLAMFMRWISNKPL 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2274g00022 466 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 28 450 IPR001563 GO:0004185|GO:0006508
Vium2274g00022 466 FunFam Carboxypeptidase 369 463 - -
Vium2274g00022 466 Gene3D alpha/beta hydrolase 23 297 IPR029058 -
Vium2274g00022 466 FunFam Serine carboxypeptidase-like 11 23 466 - -
Vium2274g00022 466 PRINTS Carboxypeptidase C serine protease (S10) family signature 130 140 IPR001563 GO:0004185|GO:0006508
Vium2274g00022 466 PRINTS Carboxypeptidase C serine protease (S10) family signature 165 190 IPR001563 GO:0004185|GO:0006508
Vium2274g00022 466 PRINTS Carboxypeptidase C serine protease (S10) family signature 117 129 IPR001563 GO:0004185|GO:0006508
Vium2274g00022 466 PRINTS Carboxypeptidase C serine protease (S10) family signature 433 446 IPR001563 GO:0004185|GO:0006508
Vium2274g00022 466 SUPERFAMILY alpha/beta-Hydrolases 29 465 IPR029058 -
Vium2274g00022 466 Gene3D - 320 466 - -
Vium2274g00022 466 FunFam Carboxypeptidase 320 465 - -
Vium2274g00022 466 Pfam Serine carboxypeptidase 33 463 IPR001563 GO:0004185|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2274g00022 Vium-Chr2274 168577 173628 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2274g00022 23 57 Calmodulin-binding Proteins AT2G22960 57.143 4.30e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2274g00022 K16296 - gmx:100792006 616.305